Cluster no. 85

Cluster no. 85

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Cluster is part of supercluster: 35

Cluster characteristics:

size	1978
size_real	1978
ecount	26271
supercluster	35
annotations_summary	22.55% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.20% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT 0.15% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase 0.10% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG 0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG 0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
pair_completeness	0.677692960135708
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.138523761375126
satellite_probability	1.62171121531873e-15
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	665
S1	632
S3	681

comparative analysis - number of edges between species:

	S2	S1	S3
S2	3220	2700	3190
S1	2700	2460	2800
S3	3190	2800	3230

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.020	0.978	0.998
S1	0.978	1.020	1.000
S3	0.998	1.000	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 3 0.00152

Ale Ty1-GAG Ale Ty1-GAG 1 0.00051

Athila Ty3-GAG Athila Ty3-GAG 2 0.00101

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 4 0.00202

TatV Ty3-INT TatV Ty3-INT 446 0.22548

TatIV_Ogre Ty3-RH TatIV_Ogre Ty3-RH 1 0.00051

Tekay Ty3-RT Tekay Ty3-RT 1 0.00051

clusters with similarity:

Cluster	Number of similarity hits

46	22
110	5
104	3

clusters connected through mates:

Cluster	Number of shared read pairs	k

46	35	0.0453
110	26	0.0917
104	9	0.0331
940	9	0.0462
823	6	0.0306
3300	6	0.0311
138	5	0.023
554	5	0.0252
938	4	0.0204
1280	4	0.0205
2890	4	0.0207
2000	3	0.0155
4510	3	0.0156
19	2	0.00399
50	2	0.00256
58	2	0.00385
75	2	0.00326
3580	2	0.0104
5440	2	0.0104
7580	2	0.0104
8340	2	0.0104
12200	2	0.0104
12200	2	0.0104
13800	2	0.0104
17100	2	0.0105
23900	2	0.0105
33000	2	0.0105
36500	2	0.0105
4	1	0.000408
9	1	0.000706
11	1	0.000702
15	1	0.00196
34	1	0.00215
36	1	0.00147
39	1	0.000809
62	1	0.00416
77	1	0.00284
86	1	0.0026
100	1	0.00336
209	1	0.00484
248	1	0.00487
426	1	0.00512
798	1	0.00514
1210	1	0.00509
1240	1	0.00522
5290	1	0.00524
6240	1	0.00524
7970	1	0.00522
8340	1	0.00522
8570	1	0.00522
9360	1	0.00522
11800	1	0.00522
11900	1	0.00522
15300	1	0.00524
18100	1	0.00524
20500	1	0.00524
23200	1	0.00524
25400	1	0.00524
27700	1	0.00524
29500	1	0.00524
34300	1	0.00524
36100	1	0.00524
41600	1	0.00524
50500	1	0.00524

CL85 ----> CL46

No. of shared pairs: :35

CL85 ----> CL110

No. of shared pairs: :26