Cluster no. 98

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Cluster is part of supercluster: 43

Cluster characteristics:

size 1262
size_real 1262
ecount 3648
supercluster 43
annotations_summary 1.03% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.08% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.08% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.08% organelle/plastid
0.08% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
0.08% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
pair_completeness 0.417977528089888
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000792393026941363
satellite_probability 5.57078696969618e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 414
S1 440
S3 408
comparative analysis - number of edges between species:
S2 S1 S3
S2 410 416 392
S1 416 430 404
S3 392 404 381
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.010 0.996 0.997
S1 0.996 1.000 1.000
S3 0.997 1.000 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00079
MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 1 0.00079
Ale Ty1-GAG Ale Ty1-GAG 1 0.00079
Ale Ty1-INT Ale Ty1-INT 1 0.00079
Angela Ty1-INT Angela Ty1-INT 13 0.01030
Ivana Ty1-INT Ivana Ty1-INT 1 0.00079

clusters with similarity:

Cluster Number of similarity hits
90 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
90 16 0.0242
767 3 0.0112
8870 3 0.0115
8910 3 0.0115
9390 3 0.0115
28 2 0.00131
39 2 0.00153
42 2 0.00157
74 2 0.00165
193 2 0.00629
3600 2 0.00766
3920 2 0.00768
5980 2 0.00766
7850 2 0.00768
13400 2 0.00768
51500 2 0.00769
3 1 0.000554
4 1 0.000397
13 1 0.000597
17 1 0.000676
25 1 0.000889
36 1 0.00133
38 1 0.000838
48 1 0.0013
61 1 0.00242
67 1 0.00158
70 1 0.00175
73 1 0.00145
80 1 0.000997
83 1 0.00211
92 1 0.00179
125 1 0.00264
146 1 0.00307
158 1 0.00324
248 1 0.00364
332 1 0.00355
2310 1 0.00382
5000 1 0.00382
5770 1 0.00383
7030 1 0.00385
7730 1 0.00383
7800 1 0.00383
9180 1 0.00384
9780 1 0.00384
10900 1 0.00384
12400 1 0.00385
15700 1 0.00385
20500 1 0.00385
21700 1 0.00385
26100 1 0.00385
28100 1 0.00385
28700 1 0.00385
35000 1 0.00385
37100 1 0.00385
38500 1 0.00385
38500 1 0.00385
39600 1 0.00385
40300 1 0.00385
41500 1 0.00385
48700 1 0.00385
49200 1 0.00385

CL98 ----> CL90

image

No. of shared pairs: :16