Cluster no. 188

Go back to cluster table

Cluster is part of supercluster: 130

Cluster characteristics:

size 170
size_real 170
ecount 819
supercluster 130
annotations_summary 90.00% organelle/plastid
6.47% organelle/mitochondria
pair_completeness 0.808510638297872
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00588235294117647
satellite_probability 3.28054772597604e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 54
S1 48
S3 68
comparative analysis - number of edges between species:
S2 S1 S3
S2 78.0 71.5 109
S1 71.5 62.0 94
S3 109.0 94.0 130
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.956 0.996 1.04
S1 0.996 0.981 1.02
S3 1.040 1.020 0.96

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 11 0.065
plastid plastid 153 0.900

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1150 5 0.345
120 4 0.14
1380 2 0.143
1 1 0.000498
985 1 0.069
21000 1 0.1