Cluster no. 82

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Cluster is part of supercluster: 22

Cluster characteristics:

size 2227
size_real 2227
ecount 57237
supercluster 22
annotations_summary 52.85% 45S_rDNA/25S_rDNA
34.44% 45S_rDNA/18S_rDNA
4.18% 45S_rDNA/5.8S_rDNA
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
pair_completeness 0.909948542024014
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000449034575662326
satellite_probability 2.49088588504597e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 801
S1 686
S3 740
comparative analysis - number of edges between species:
S2 S1 S3
S2 7130 6220 6750
S1 6220 5660 6030
S3 6750 6030 6440
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.010 0.989 1.000
S1 0.989 1.010 1.000
S3 1.000 1.000 0.997

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
18S_rDNA 18S_rDNA 767 0.34441
25S_rDNA 25S_rDNA 1177 0.52851
5.8S_rDNA 5.8S_rDNA 93 0.04176
CRM Ty3-INT CRM Ty3-INT 1 0.00045

clusters with similarity:

Cluster Number of similarity hits
87 194

clusters connected through mates:

Cluster Number of shared
read pairs		 k
87 79 0.709
14100 2 0.037
10 1 0.000777
13 1 0.000681
17 1 0.000786
18 1 0.000522
21 1 0.00118
342 1 0.0155
6280 1 0.0183
9890 1 0.0185
16400 1 0.0187

CL82 ----> CL87

image

No. of shared pairs: :79