Cluster no. 61

Go back to cluster table

Cluster is part of supercluster: 9

Cluster characteristics:

size 3276
size_real 3276
ecount 30223
supercluster 9
annotations_summary 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.828125
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000305250305250305
satellite_probability 1.43574013326601e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 1090
S1 1070
S3 1110
comparative analysis - number of edges between species:
S2 S1 S3
S2 3440 3320 3350
S1 3320 3450 3380
S3 3350 3380 3240
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.020 0.978 1.000
S1 0.978 1.010 1.010
S3 1.000 1.010 0.987

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-INT Reina Ty3-INT 1 0.00031

clusters with similarity:

Cluster Number of similarity hits
77 93
133 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
77 98 0.31
50 17 0.0228
3540 6 0.0382
2340 5 0.0316
75 3 0.00519
1080 3 0.0189
2320 3 0.019
2530 3 0.019
3250 3 0.0191
5200 3 0.0192
133 2 0.0107
8750 2 0.0129
10700 2 0.0129
11700 2 0.0129
13900 2 0.0129
20900 2 0.0129
38900 2 0.0129
6 1 0.000631
7 1 0.000435
10 1 0.00072
12 1 0.000539
20 1 0.00233
22 1 0.000886
25 1 0.00098
27 1 0.000741
29 1 0.000947
83 1 0.0027
86 1 0.00287
91 1 0.00356
93 1 0.00257
98 1 0.00242
215 1 0.00581
965 1 0.00645
1720 1 0.00641
3410 1 0.00637
5970 1 0.00641
6260 1 0.00641
6790 1 0.00641
7410 1 0.00641
9330 1 0.00643
9610 1 0.00647
11400 1 0.00643
12900 1 0.00647
18500 1 0.00645
21900 1 0.00645
23300 1 0.00645
29200 1 0.00645
30000 1 0.00645
32000 1 0.00645
36700 1 0.00645
38600 1 0.00645
39800 1 0.00645
44800 1 0.00645
45800 1 0.00645
49400 1 0.00645
49700 1 0.00645
49800 1 0.00645

CL61 ----> CL77

image

No. of shared pairs: :98

CL61 ----> CL50

image

No. of shared pairs: :17