Cluster no. 31

Cluster no. 31

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Cluster is part of supercluster: 1

Cluster characteristics:

size	6094
size_real	6094
ecount	441649
supercluster	1
annotations_summary	0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
pair_completeness	0.433207902163688
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.131276665572694
satellite_probability	2.37744777130659e-14
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	2030
S1	1990
S3	2080

comparative analysis - number of edges between species:

	S2	S1	S3
S2	48800	48000	50100
S1	48000	46200	49000
S3	50100	49000	52300

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.998	1.010	0.995
S1	1.010	0.994	0.998
S3	0.995	0.998	1.010

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Reina Ty3-RH Reina Ty3-RH 1 0.00016

clusters with similarity:

Cluster	Number of similarity hits

26	19500
2	15100
72	67
159	14
182	11
23	9
1070	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

2	1070	0.315
26	977	0.412
72	48	0.0311
182	37	0.0298
7	6	0.00179
159	6	0.00482
9	5	0.00206
23	5	0.00251
8	4	0.00225
35	4	0.00138
4310	4	0.00331
74	3	0.00139
6600	3	0.00249
8130	3	0.00249
24	2	0.000866
37	2	0.000861
75	2	0.00123
13200	2	0.00166
16200	2	0.00166
29600	2	0.00166
37300	2	0.00166
45600	2	0.00166
4	1	0.000289
5	1	0.000298
10	1	0.00041
11	1	0.00041
13	1	0.000382
16	1	0.00035
25	1	0.000483
28	1	0.000405
33	1	0.000483
42	1	0.00045
48	1	0.000582
55	1	0.00066
57	1	0.000682
59	1	0.000618
69	1	0.000677
79	1	0.000633
80	1	0.000513
97	1	0.000619
126	1	0.000795
136	1	0.000765
233	1	0.000803
1070	1	0.000828
5240	1	0.000829
6680	1	0.000829
6970	1	0.000829
12700	1	0.000829
13500	1	0.000829
24800	1	0.000829
28500	1	0.000829
29200	1	0.000829
29300	1	0.000829
30700	1	0.000829
43600	1	0.000829
45400	1	0.000829
52000	1	0.000829
52100	1	0.000829

CL31 ----> CL2

No. of shared pairs: :1069

CL31 ----> CL26

No. of shared pairs: :977

CL31 ----> CL72

No. of shared pairs: :48

CL31 ----> CL182

No. of shared pairs: :37