Cluster no. 58

Cluster no. 58

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Cluster is part of supercluster: 24

Cluster characteristics:

size	3550
size_real	3550
ecount	26077
supercluster	24
annotations_summary	17.13% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 9.18% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT 7.49% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH 5.15% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH 3.38% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT 0.23% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT 0.20% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT 0.17% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH 0.17% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH 0.11% organelle/mitochondria 0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-aRH 0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatI:Ty3-INT
pair_completeness	0.68646080760095
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.129014084507042
satellite_probability	6.09639396561918e-16
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	1070
S1	1300
S3	1180

comparative analysis - number of edges between species:

	S2	S1	S3
S2	2300	2830	2450
S1	2830	3820	3260
S3	2450	3260	2880

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.040	0.983	0.980
S1	0.983	1.010	0.999
S3	0.980	0.999	1.020

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 4 0.00113

TatI Ty3-INT TatI Ty3-INT 1 0.00028

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 8 0.00225

TatV Ty3-INT TatV Ty3-INT 608 0.17127

TatV Ty3-PROT TatV Ty3-PROT 120 0.03380

TatIV_Ogre Ty3-RH TatIV_Ogre Ty3-RH 6 0.00169

TatV Ty3-RH TatV Ty3-RH 266 0.07493

TatIV_Ogre Ty3-RT TatIV_Ogre Ty3-RT 7 0.00197

TatV Ty3-RT TatV Ty3-RT 326 0.09183

TatII Ty3-aRH TatII Ty3-aRH 1 0.00028

TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 6 0.00169

TatV Ty3-aRH TatV Ty3-aRH 183 0.05155

clusters with similarity:

Cluster	Number of similarity hits

50

1

clusters connected through mates:

Cluster	Number of shared read pairs	k

92	26	0.0412
135	24	0.0611
209	15	0.0433
519	7	0.0204
2910	6	0.018
865	5	0.0148
7060	4	0.012
7230	4	0.012
4	3	0.00116
50	3	0.00325
574	3	0.00889
2410	3	0.00901
6310	3	0.00904
10200	3	0.00905
11700	3	0.00905
13500	3	0.00905
27	2	0.00131
85	2	0.00385
249	2	0.00575
3560	2	0.00601
5440	2	0.00602
6390	2	0.00602
12900	2	0.00603
18600	2	0.00604
20200	2	0.00604
20900	2	0.00604
21000	2	0.00604
22300	2	0.00604
28400	2	0.00604
28900	2	0.00604
29800	2	0.00604
30000	2	0.00604
36300	2	0.00604
37700	2	0.00604
39300	2	0.00604
44300	2	0.00604
46700	2	0.00604
48100	2	0.00604
49300	2	0.00604
12	1	0.000492
13	1	0.000573
23	1	0.000895
24	1	0.000697
26	1	0.000667
28	1	0.000626
39	1	0.000726
40	1	0.00105
48	1	0.00119
59	1	0.00135
64	1	0.00157
69	1	0.00166
72	1	0.00149
73	1	0.00132
74	1	0.000778
75	1	0.00133
86	1	0.00191
87	1	0.00257
220	1	0.00283
350	1	0.00296
552	1	0.00298
724	1	0.00298
839	1	0.00297
1540	1	0.003
2340	1	0.00301
3480	1	0.003
4240	1	0.00302
4770	1	0.00301
5010	1	0.00302
6480	1	0.00301
7140	1	0.00302
7430	1	0.00301
7510	1	0.00301
8060	1	0.00303
9300	1	0.00302
9600	1	0.00302
9840	1	0.00303
10400	1	0.00303
11400	1	0.00302
12700	1	0.00302
18200	1	0.00302
19300	1	0.00302
19700	1	0.00302
20200	1	0.00302
20600	1	0.00302
27600	1	0.00302
29100	1	0.00302
33600	1	0.00302
33800	1	0.00302
33800	1	0.00302
38400	1	0.00302
38600	1	0.00302
42100	1	0.00302
45700	1	0.00302
50300	1	0.00302

CL58 ----> CL92

No. of shared pairs: :26

CL58 ----> CL135

No. of shared pairs: :24

CL58 ----> CL209

No. of shared pairs: :15