Cluster no. 7

Cluster no. 7

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Cluster is part of supercluster: 1

Cluster characteristics:

size	10222
size_real	10222
ecount	901349
supercluster	1
annotations_summary	0.04% organelle/plastid 0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT 0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
pair_completeness	0.408571034862891
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00547837996478184
satellite_probability	1.06251818752296e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	3330
S1	3400
S3	3490

comparative analysis - number of edges between species:

	S2	S1	S3
S2	89500	97500	96900
S1	97500	107000	106000
S3	96900	106000	105000

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.000	0.998	1.000
S1	0.998	1.000	0.999
S3	1.000	0.999	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 4 3.9e-04

Ale Ty1-INT Ale Ty1-INT 3 2.9e-04

Ale Ty1-RH Ale Ty1-RH 1 9.8e-05

SIRE Ty1-RH SIRE Ty1-RH 1 9.8e-05

Athila Ty3-INT Athila Ty3-INT 1 9.8e-05

Reina Ty3-INT Reina Ty3-INT 1 9.8e-05

TatV Ty3-INT TatV Ty3-INT 1 9.8e-05

Reina Ty3-PROT Reina Ty3-PROT 1 9.8e-05

TatV Ty3-PROT TatV Ty3-PROT 1 9.8e-05

Galadriel Ty3-RT Galadriel Ty3-RT 1 9.8e-05

TatV Ty3-aRH TatV Ty3-aRH 1 9.8e-05

clusters with similarity:

Cluster	Number of similarity hits

5	38200
26	19300
30	1160
23	163
10	114
2	49
156	11
240	4
18	3

clusters connected through mates:

Cluster	Number of shared read pairs	k

5	1890	0.44
26	895	0.27
30	687	0.213
2	80	0.0185
156	61	0.0274
23	24	0.00818
10	23	0.0068
240	22	0.0101
35	16	0.00416
18	8	0.002
74	8	0.00258
12	7	0.00182
13	7	0.00197
42	7	0.00221
1370	7	0.00326
4	6	0.00136
9	6	0.00178
31	6	0.00179
39	6	0.00188
37	5	0.00153
8	4	0.00147
27	4	0.0012
22	3	0.000961
28	3	0.000879
64	3	0.00122
1760	3	0.0014
2800	3	0.0014
11	2	0.000592
25	2	0.000664
38	2	0.000649
67	2	0.000794
80	2	0.000692
86	2	0.000855
416	2	0.000924
3800	2	0.000931
3880	2	0.000931
5800	2	0.000931
9010	2	0.000931
9190	2	0.000931
11200	2	0.000931
11300	2	0.000931
15200	2	0.000932
20700	2	0.000932
27900	2	0.000932
35600	2	0.000932
36600	2	0.000932
39800	2	0.000932
42300	2	0.000932
48900	2	0.000932
1	1	0.000241
16	1	0.000263
17	1	0.000297
19	1	0.000407
21	1	0.00034
32	1	0.000305
33	1	0.000332
41	1	0.000432
50	1	0.000365
51	1	0.000403
53	1	0.000387
56	1	0.000323
57	1	0.000416
59	1	0.000391
61	1	0.000435
68	1	0.000361
69	1	0.000413
70	1	0.000407
71	1	0.000415
72	1	0.000402
73	1	0.000388
87	1	0.000454
99	1	0.000449
100	1	0.000444
126	1	0.000455
133	1	0.000459
155	1	0.000448
159	1	0.000457
233	1	0.000457
238	1	0.00046
375	1	0.000465
693	1	0.000464
763	1	0.000464
1010	1	0.000465
1640	1	0.000465
1910	1	0.000465
2250	1	0.000465
3690	1	0.000466
5350	1	0.000466
6700	1	0.000466
6900	1	0.000466
6980	1	0.000466
7110	1	0.000466
7200	1	0.000466
8080	1	0.000466
8760	1	0.000466
9960	1	0.000466
9970	1	0.000466
11000	1	0.000466
13900	1	0.000466
15300	1	0.000466
22500	1	0.000466
24300	1	0.000466
25600	1	0.000466
25800	1	0.000466
27900	1	0.000466
28900	1	0.000466
31200	1	0.000466
31900	1	0.000466
32300	1	0.000466
35600	1	0.000466
45800	1	0.000466
46700	1	0.000466
50600	1	0.000466
51400	1	0.000466

CL7 ----> CL5

No. of shared pairs: :1891

CL7 ----> CL26

No. of shared pairs: :895

CL7 ----> CL30

No. of shared pairs: :687

CL7 ----> CL2

No. of shared pairs: :80

CL7 ----> CL156

No. of shared pairs: :61

CL7 ----> CL23

No. of shared pairs: :24

CL7 ----> CL10

No. of shared pairs: :23

CL7 ----> CL240

No. of shared pairs: :22

CL7 ----> CL35

No. of shared pairs: :16