Cluster no. 53

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Cluster is part of supercluster: 7

Cluster characteristics:

size	3901
size_real	3901
ecount	97475
supercluster	7
annotations_summary	4.13% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT 2.28% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH 0.05% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT 0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-RH 0.03% Class_I/LTR/Ty1_copia/Alesia:Ty1-PROT 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII 0.03% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT 0.03% organelle/plastid 0.03% Class_I/LTR/Ty1_copia/TAR:Ty1-RT 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
pair_completeness	0.634953897736798
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00102537810817739
satellite_probability	4.97759293480724e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	1280
S1	1350
S3	1280

comparative analysis - number of edges between species:

	S2	S1	S3
S2	10800	11000	10600
S1	11000	11800	10700
S3	10600	10700	10200

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.998	0.989	1.010
S1	0.989	1.030	0.983
S3	1.010	0.983	1.000

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00026

SIRE Ty1-INT SIRE Ty1-INT 2 0.00051

Alesia Ty1-PROT Alesia Ty1-PROT 1 0.00026

Ivana Ty1-PROT Ivana Ty1-PROT 1 0.00026

SIRE Ty1-PROT SIRE Ty1-PROT 161 0.04127

Ale Ty1-RH Ale Ty1-RH 2 0.00051

SIRE Ty1-RH SIRE Ty1-RH 89 0.02281

TAR Ty1-RT TAR Ty1-RT 1 0.00026

Reina Ty3-CHDII Reina Ty3-CHDII 1 0.00026

Athila Ty3-INT Athila Ty3-INT 1 0.00026

Tekay Ty3-RT Tekay Ty3-RT 1 0.00026

clusters with similarity:

Cluster	Number of similarity hits

25	737
73	158
86	156
102	17
5	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

25	262	0.201
73	147	0.17
86	70	0.111
102	33	0.0671
2190	8	0.0182
12	4	0.00187
6850	4	0.00914
22	3	0.00213
7660	3	0.00686
10800	3	0.00686
13300	3	0.00686
39	2	0.00135
67	2	0.00248
80	2	0.0017
3880	2	0.00457
8300	2	0.00458
10000	2	0.00458
15300	2	0.00458
15600	2	0.00458
27600	2	0.00458
28200	2	0.00458
29200	2	0.00458
34900	2	0.00458
42900	2	0.00458
48300	2	0.00458
2	1	0.000381
4	1	0.000371
7	1	0.000387
9	1	0.000602
13	1	0.00054
17	1	0.000604
23	1	0.000818
24	1	0.00065
36	1	0.00108
37	1	0.000644
46	1	0.000982
48	1	0.00105
50	1	0.000973
64	1	0.00135
70	1	0.00134
76	1	0.00123
534	1	0.00227
717	1	0.00227
7180	1	0.00229
7400	1	0.00229
11700	1	0.00229
13000	1	0.00229
21700	1	0.00229
23700	1	0.00229
27800	1	0.00229
28500	1	0.00229
31100	1	0.00229
40100	1	0.00229
40800	1	0.00229
45100	1	0.00229
48200	1	0.00229
50500	1	0.00229

CL53 ----> CL25

No. of shared pairs: :262

CL53 ----> CL73

No. of shared pairs: :147

CL53 ----> CL86

No. of shared pairs: :70

CL53 ----> CL102

No. of shared pairs: :33