Cluster no. 164

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Cluster is part of supercluster: 107

Cluster characteristics:

size 212
size_real 212
ecount 307
supercluster 107
annotations_summary
pair_completeness 0.158469945355191
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00471698113207547
satellite_probability 1.63193821641774e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 78
S1 63
S3 71
comparative analysis - number of edges between species:
S2 S1 S3
S2 44.0 34.0 30.5
S1 34.0 26.0 29.5
S3 30.5 29.5 49.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.150 1.070 0.792
S1 1.070 0.996 0.928
S3 0.792 0.928 1.270

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
27 19 0.0149
1 2 0.000963
30 2 0.00172
923 2 0.0235
1910 2 0.0248
2980 2 0.025
3860 2 0.0252
4280 2 0.0255
7460 2 0.0253
28300 2 0.0256
50100 2 0.0256
11 1 0.000763
37 1 0.000836
38 1 0.000988
44 1 0.00112
56 1 0.000971
60 1 0.00204
624 1 0.0117
962 1 0.0119
1360 1 0.012
3200 1 0.0125
4060 1 0.0126
5030 1 0.0126
5500 1 0.0127
5710 1 0.0128
6640 1 0.0127
6940 1 0.0127
8420 1 0.0127
8650 1 0.0127
9500 1 0.0127
16300 1 0.0128
29800 1 0.0128
32400 1 0.0128
35900 1 0.0128
36500 1 0.0128
37100 1 0.0128
43600 1 0.0128
48300 1 0.0128
51400 1 0.0128

CL164 ----> CL27

image

No. of shared pairs: :19