Cluster no. 184
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Cluster is part of supercluster: 126
Cluster characteristics:
| size |
176 |
| size_real |
176 |
| ecount |
590 |
| supercluster |
126 |
| annotations_summary |
|
| pair_completeness |
0.419354838709677 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00568181818181818 |
| satellite_probability |
1.0345154302985e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S2 |
57 |
| S1 |
60 |
| S3 |
59 |
comparative analysis - number of edges between species:
|
S2 |
S1 |
S3 |
| S2 |
81.0 |
79.5 |
56.0 |
| S1 |
79.5 |
64.0 |
61.5 |
| S3 |
56.0 |
61.5 |
51.0 |
comparative analysis - observed/expected number of edges between species
|
S2 |
S1 |
S3 |
| S2 |
1.020 |
1.060 |
0.906 |
| S1 |
1.060 |
0.899 |
1.050 |
| S3 |
0.906 |
1.050 |
1.060 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 24 |
19 |
0.0167 |
| 45 |
15 |
0.0318 |
| 19600 |
2 |
0.0541 |
| 26900 |
2 |
0.0541 |
| 4 |
1 |
0.000436 |
| 37 |
1 |
0.000866 |
| 95 |
1 |
0.00406 |
| 108 |
1 |
0.00922 |
| 326 |
1 |
0.0168 |
| 716 |
1 |
0.023 |
| 6020 |
1 |
0.0263 |
|
CL184 ----> CL24
No. of shared pairs: :19
CL184 ----> CL45
No. of shared pairs: :15