Cluster no. 83

Cluster no. 83

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Cluster is part of supercluster: 10

Cluster characteristics:

size	2114
size_real	2114
ecount	33926
supercluster	10
annotations_summary	10.97% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG 0.05% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.05% organelle/plastid
pair_completeness	0.660644147682639
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000473036896877956
satellite_probability	3.15659983381055e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	671
S1	713
S3	730

comparative analysis - number of edges between species:

	S2	S1	S3
S2	3560	3650	3670
S1	3650	3770	3940
S3	3670	3940	4070

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.02	1.000	0.98
S1	1.00	0.991	1.01
S3	0.98	1.010	1.01

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00047

SIRE Ty1-GAG SIRE Ty1-GAG 232 0.10974

SIRE Ty1-PROT SIRE Ty1-PROT 1 0.00047

Tekay Ty3-INT Tekay Ty3-INT 1 0.00047

clusters with similarity:

Cluster	Number of similarity hits

36	169
65	10
91	7

clusters connected through mates:

Cluster	Number of shared read pairs	k

36	112	0.158
91	77	0.224
65	22	0.0561
934	10	0.0448
706	7	0.031
37	3	0.00225
12	2	0.00104
13	2	0.00123
21	2	0.00198
1380	2	0.00907
4800	2	0.00915
6870	2	0.00917
8320	2	0.0092
14000	2	0.0092
2	1	0.000416
5	1	0.000422
14	1	0.000516
30	1	0.00077
38	1	0.000869
40	1	0.0012
42	1	0.000812
50	1	0.00124
61	1	0.0027
67	1	0.0017
69	1	0.00205
70	1	0.0019
72	1	0.0018
74	1	0.000854
80	1	0.00104
81	1	0.00299
86	1	0.00244
93	1	0.00221
95	1	0.00234
98	1	0.00211
99	1	0.00334
108	1	0.00347
117	1	0.00332
161	1	0.00364
166	1	0.00355
379	1	0.00442
451	1	0.00444
838	1	0.00448
1740	1	0.00455
7760	1	0.00459
9760	1	0.0046
10600	1	0.0046
13500	1	0.0046
13600	1	0.00462
14700	1	0.00461
18000	1	0.00461
34800	1	0.00461
42100	1	0.00461
42100	1	0.00461
44800	1	0.00461
45900	1	0.00461

CL83 ----> CL36

No. of shared pairs: :112

CL83 ----> CL91

No. of shared pairs: :77

CL83 ----> CL65

No. of shared pairs: :22

CL83 ----> CL934

No. of shared pairs: :10