Cluster no. 189

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Cluster is part of supercluster: 131

Cluster characteristics:

size 163
size_real 163
ecount 430
supercluster 131
annotations_summary 0.61% organelle/plastid
pair_completeness 0.442477876106195
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.368098159509202
satellite_probability 1.06156586864318e-07
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 58
S1 48
S3 57
comparative analysis - number of edges between species:
S2 S1 S3
S2 63.0 55.5 51.5
S1 55.5 38.0 36.5
S3 51.5 36.5 42.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.937 1.080 1.000
S1 1.080 0.967 0.929
S3 1.000 0.929 1.070

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.0061

clusters connected through mates:

Cluster Number of shared
read pairs		 k
605 4 0.0964
39 2 0.00186
1480 2 0.0556
35100 2 0.0615
42400 2 0.0615
11 1 0.00079
65 1 0.00481
112 1 0.0167
25800 1 0.0308