Cluster no. 155

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Cluster is part of supercluster: 98

Cluster characteristics:

size 240
size_real 240
ecount 569
supercluster 98
annotations_summary
pair_completeness 0.153846153846154
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00416666666666667
satellite_probability 1.62805081405569e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 63
S1 94
S3 83
comparative analysis - number of edges between species:
S2 S1 S3
S2 49.0 62.5 55.0
S1 62.5 72.0 64.5
S3 55.0 64.5 84.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.010 1.070 0.924
S1 1.070 1.030 0.906
S3 0.924 0.906 1.150

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
10 14

clusters connected through mates:

Cluster Number of shared
read pairs		 k
10 60 0.0454
380 6 0.0545
629 4 0.0412
1600 4 0.0435
37 2 0.00166
39 2 0.00176
5840 2 0.0222
7 1 0.000448
13 1 0.000665
27 1 0.000779
66 1 0.00309
325 1 0.00889
541 1 0.00971
904 1 0.0106
1300 1 0.0108
1830 1 0.011
2460 1 0.0109
7250 1 0.0111
7400 1 0.0112
8410 1 0.0112
13000 1 0.0113
18500 1 0.0112
51800 1 0.0112

CL155 ----> CL10

image

No. of shared pairs: :60