Cluster no. 14

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Cluster is part of supercluster: 2

Cluster characteristics:

size 7896
size_real 7896
ecount 502964
supercluster 2
annotations_summary 0.08% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Bianca:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Bryco:Ty1-RH
0.01% Class_I/LINE:LINE-ENDO
pair_completeness 0.392592592592593
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0321681864235056
satellite_probability 4.54795477018292e-19
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 2520
S1 2760
S3 2610
comparative analysis - number of edges between species:
S2 S1 S3
S2 50500 55200 53800
S1 55200 60200 58600
S3 53800 58600 56900
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.998 1 1.000
S1 1.000 1 1.000
S3 1.000 1 0.998

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-ENDO LINE LINE-ENDO 1 0.00013
Ale Ty1-INT Ale Ty1-INT 6 0.00076
Bianca Ty1-INT Bianca Ty1-INT 2 0.00025
Bryco Ty1-RH Bryco Ty1-RH 1 0.00013
Ale Ty1-RT Ale Ty1-RT 2 0.00025
TatV Ty3-GAG TatV Ty3-GAG 1 0.00013
Reina Ty3-INT Reina Ty3-INT 1 0.00013

clusters with similarity:

Cluster Number of similarity hits
16 11500
3 2200
6 397
45 184
118 173
17 86
89 5
204 5
124 2
8 1
134 1
148 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
16 1110 0.329
3 724 0.222
6 249 0.079
17 194 0.0659
45 101 0.0468
118 48 0.0264
124 37 0.0199
148 33 0.0183
204 30 0.0169
24 13 0.0046
42 11 0.00402
13 10 0.00319
4 8 0.00201
9 7 0.00237
22 7 0.0026
25 7 0.0027
39 7 0.00253
11 5 0.00169
37 5 0.00176
38 4 0.00151
46 4 0.00174
67 4 0.00191
1760 4 0.00232
2600 4 0.00232
8 3 0.00131
40 3 0.00128
68 3 0.00128
74 3 0.00112
89 3 0.00154
90 3 0.00141
134 3 0.00162
1050 3 0.00174
1370 3 0.00174
2390 3 0.00174
5980 3 0.00174
7770 3 0.00174
11300 3 0.00174
12500 3 0.00174
1 2 0.000537
12 2 0.000584
34 2 0.001
56 2 0.000748
80 2 0.000811
86 2 0.00104
777 2 0.00116
1150 2 0.00116
2870 2 0.00116
3690 2 0.00116
4060 2 0.00116
6360 2 0.00116
7320 2 0.00116
11200 2 0.00116
19000 2 0.00116
30500 2 0.00116
37200 2 0.00116
47400 2 0.00116
49600 2 0.00116
49800 2 0.00116
10 1 0.000338
15 1 0.00049
19 1 0.000492
21 1 0.000398
27 1 0.000343
28 1 0.000335
36 1 0.000452
50 1 0.000432
52 1 0.000526
54 1 0.000514
60 1 0.000468
64 1 0.000493
66 1 0.000511
70 1 0.000492
72 1 0.000485
73 1 0.000465
83 1 0.000516
95 1 0.000517
99 1 0.000554
119 1 0.000535
133 1 0.00057
161 1 0.000561
186 1 0.000572
215 1 0.000575
264 1 0.000576
356 1 0.000576
476 1 0.000578
1110 1 0.000579
1120 1 0.000579
1350 1 0.00058
1760 1 0.000579
1920 1 0.00058
2450 1 0.00058
2820 1 0.00058
3070 1 0.00058
3210 1 0.00058
4040 1 0.00058
5170 1 0.00058
6460 1 0.00058
6480 1 0.00058
6530 1 0.00058
6660 1 0.00058
6740 1 0.00058
7100 1 0.00058
7170 1 0.00058
7380 1 0.00058
8800 1 0.000581
9270 1 0.00058
9350 1 0.00058
10100 1 0.00058
10200 1 0.00058
10800 1 0.000581
11300 1 0.00058
11800 1 0.00058
12100 1 0.00058
12200 1 0.00058
12400 1 0.00058
13600 1 0.000581
14700 1 0.00058
16400 1 0.00058
18100 1 0.00058
18200 1 0.00058
18600 1 0.00058
22300 1 0.00058
23800 1 0.00058
25200 1 0.00058
25700 1 0.00058
25800 1 0.00058
28400 1 0.00058
28600 1 0.00058
29200 1 0.00058
30600 1 0.00058
31800 1 0.00058
39300 1 0.00058
39400 1 0.00058
42100 1 0.00058
43500 1 0.00058
44400 1 0.00058
44500 1 0.00058
44700 1 0.00058
44700 1 0.00058
46100 1 0.00058
46400 1 0.00058
47300 1 0.00058
47700 1 0.00058
48600 1 0.00058
50600 1 0.00058
51800 1 0.00058
52500 1 0.00058

CL14 ----> CL16

image

No. of shared pairs: :1111

CL14 ----> CL3

image

No. of shared pairs: :724

CL14 ----> CL6

image

No. of shared pairs: :249

CL14 ----> CL17

image

No. of shared pairs: :194

CL14 ----> CL45

image

No. of shared pairs: :101

CL14 ----> CL118

image

No. of shared pairs: :48

CL14 ----> CL124

image

No. of shared pairs: :37

CL14 ----> CL148

image

No. of shared pairs: :33

CL14 ----> CL204

image

No. of shared pairs: :30

CL14 ----> CL24

image

No. of shared pairs: :13

CL14 ----> CL42

image

No. of shared pairs: :11

CL14 ----> CL13

image

No. of shared pairs: :10