Cluster no. 218

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Cluster is part of supercluster: 160

Cluster characteristics:

size 117
size_real 117
ecount 187
supercluster 160
annotations_summary 99.15% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.073394495412844
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00854700854700855
satellite_probability 4.34759181408422e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 25
S1 46
S3 46
comparative analysis - number of edges between species:
S2 S1 S3
S2 7 16.0 18.0
S1 16 19.0 28.5
S3 18 28.5 36.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.779 1.150 0.995
S1 1.150 0.881 1.020
S3 0.995 1.020 0.989

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-INT Tekay Ty3-INT 116 0.99

clusters connected through mates:

Cluster Number of shared
read pairs		 k
194 17 0.144
246 11 0.129
175 3 0.0247
26400 2 0.0388
48600 2 0.0388
35 1 0.00057
48 1 0.00177
3030 1 0.0187
12800 1 0.0192
19100 1 0.0194
30800 1 0.0194
33000 1 0.0194
34500 1 0.0194
37100 1 0.0194
43500 1 0.0194

CL218 ----> CL194

image

No. of shared pairs: :17

CL218 ----> CL246

image

No. of shared pairs: :11