Cluster no. 50

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Cluster is part of supercluster: 13

Cluster characteristics:

size 4441
size_real 4441
ecount 33303
supercluster 13
annotations_summary 6.60% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.34% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.20% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG
0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.02% Class_II/Subclass_1/TIR/Tc1_Mariner:Mariner-TPase
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.578741557056523
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0121594235532538
satellite_probability 4.44676966830506e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 1370
S1 1580
S3 1500
comparative analysis - number of edges between species:
S2 S1 S3
S2 3060 3560 3520
S1 3560 4060 4030
S3 3520 4030 3960
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.992 1.000 1.000
S1 1.000 0.996 1.000
S3 1.000 1.000 0.997

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tc1_Mariner Mariner-TPase Tc1_Mariner Mariner-TPase 1 0.00023
Ale Ty1-INT Ale Ty1-INT 2 0.00045
Ale Ty1-RT Ale Ty1-RT 1 0.00023
Athila Ty3-GAG Athila Ty3-GAG 15 0.00338
TatIV_Ogre Ty3-GAG TatIV_Ogre Ty3-GAG 9 0.00203
TatV Ty3-GAG TatV Ty3-GAG 293 0.06598
Reina Ty3-INT Reina Ty3-INT 1 0.00023
TatV Ty3-INT TatV Ty3-INT 1 0.00023

clusters with similarity:

Cluster Number of similarity hits
75 33
46 30
29 22
105 14
58 1
173 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
46 156 0.133
75 50 0.0492
61 17 0.0228
15 16 0.0175
19 14 0.0155
336 8 0.0132
920 8 0.0133
1230 7 0.0117
29 5 0.00335
92 5 0.0056
738 5 0.00835
1540 5 0.00838
3060 5 0.0084
3110 5 0.0084
105 4 0.00526
456 4 0.0066
591 4 0.00665
2150 4 0.00672
3410 4 0.00672
3930 4 0.00672
39 3 0.00183
58 3 0.00325
2080 3 0.00503
2150 3 0.00503
2310 3 0.00504
2340 3 0.00503
2780 3 0.00503
3070 3 0.00505
3340 3 0.00505
3520 3 0.00504
3700 3 0.00504
4120 3 0.00504
4240 3 0.00504
5140 3 0.00505
6260 3 0.00505
6430 3 0.00505
6520 3 0.00505
9050 3 0.00505
11500 3 0.00505
12200 3 0.00505
13100 3 0.00505
14100 3 0.00505
2 2 0.000719
8 2 0.00172
10 2 0.00109
17 2 0.0011
18 2 0.000815
25 2 0.00137
48 2 0.00181
73 2 0.00196
85 2 0.00256
99 2 0.00296
1080 2 0.00334
1190 2 0.00336
1550 2 0.00336
2060 2 0.00335
2230 2 0.00336
2500 2 0.00336
2580 2 0.00336
2740 2 0.00336
3250 2 0.00336
3480 2 0.00337
4500 2 0.00336
4640 2 0.00336
4650 2 0.00337
4940 2 0.00337
5010 2 0.00336
7410 2 0.00336
7530 2 0.00336
8280 2 0.00337
10600 2 0.00337
11500 2 0.00337
11800 2 0.00337
12100 2 0.00337
12400 2 0.00337
12500 2 0.00337
12800 2 0.00337
13100 2 0.00337
14400 2 0.00337
14600 2 0.00337
20100 2 0.00337
20700 2 0.00337
21200 2 0.00337
21400 2 0.00337
22400 2 0.00337
23200 2 0.00337
28900 2 0.00337
32500 2 0.00337
34100 2 0.00337
35000 2 0.00337
36000 2 0.00337
36900 2 0.00337
37600 2 0.00337
43300 2 0.00337
43800 2 0.00337
48100 2 0.00337
48700 2 0.00337
49900 2 0.00337
50500 2 0.00337
51800 2 0.00337
52100 2 0.00337
3 1 0.000468
4 1 0.000351
5 1 0.000364
6 1 0.000494
7 1 0.000365
9 1 0.00055
11 1 0.000547
13 1 0.000498
14 1 0.000432
20 1 0.00115
22 1 0.000638
24 1 0.000589
27 1 0.000559
32 1 0.00058
34 1 0.00115
36 1 0.000922
38 1 0.000655
41 1 0.00131
44 1 0.000708
47 1 0.00114
53 1 0.000973
59 1 0.000995
64 1 0.00111
65 1 0.0013
68 1 0.000821
72 1 0.00107
79 1 0.00103
80 1 0.000748
83 1 0.00124
89 1 0.00121
91 1 0.00139
96 1 0.00113
110 1 0.00146
113 1 0.00145
115 1 0.00156
118 1 0.00146
130 1 0.00142
173 1 0.00159
235 1 0.00165
330 1 0.00167
595 1 0.00167
1560 1 0.00168
1770 1 0.00168
1810 1 0.00168
2050 1 0.00168
2270 1 0.00168
2520 1 0.00168
2720 1 0.00168
2730 1 0.00168
3200 1 0.00168
3370 1 0.00168
3580 1 0.00168
3620 1 0.00168
3650 1 0.00168
3870 1 0.00168
3950 1 0.00168
4080 1 0.00168
4220 1 0.00168
4560 1 0.00168
4840 1 0.00168
5140 1 0.00168
5270 1 0.00168
5300 1 0.00168
5550 1 0.00168
5600 1 0.00168
5910 1 0.00168
6230 1 0.00168
6310 1 0.00168
6490 1 0.00168
6690 1 0.00168
7420 1 0.00168
7620 1 0.00168
8020 1 0.00168
8120 1 0.00168
8320 1 0.00168
8360 1 0.00168
8790 1 0.00168
8850 1 0.00168
9510 1 0.00168
9590 1 0.00168
9840 1 0.00168
10300 1 0.00168
10300 1 0.00168
10500 1 0.00168
10700 1 0.00168
11700 1 0.00168
13100 1 0.00168
13300 1 0.00168
13300 1 0.00168
13500 1 0.00168
14300 1 0.00168
14400 1 0.00168
14400 1 0.00168
14500 1 0.00168
14800 1 0.00168
14900 1 0.00168
17800 1 0.00168
18200 1 0.00168
18500 1 0.00168
18600 1 0.00168
19600 1 0.00168
20000 1 0.00168
20500 1 0.00168
20700 1 0.00168
20700 1 0.00168
21200 1 0.00168
21600 1 0.00168
21900 1 0.00168
22100 1 0.00168
23700 1 0.00168
23800 1 0.00168
24300 1 0.00168
24300 1 0.00168
24500 1 0.00168
25400 1 0.00168
25700 1 0.00168
26600 1 0.00168
26700 1 0.00168
26700 1 0.00168
27700 1 0.00168
28000 1 0.00168
28200 1 0.00168
29800 1 0.00168
30000 1 0.00168
30300 1 0.00168
30900 1 0.00168
31200 1 0.00168
31300 1 0.00168
31300 1 0.00168
31600 1 0.00168
32200 1 0.00168
32900 1 0.00168
34800 1 0.00168
35800 1 0.00168
36200 1 0.00168
36200 1 0.00168
36400 1 0.00168
37700 1 0.00168
38200 1 0.00168
38200 1 0.00168
38400 1 0.00168
39900 1 0.00168
40000 1 0.00168
40000 1 0.00168
40100 1 0.00168
41400 1 0.00168
41800 1 0.00168
42000 1 0.00168
42000 1 0.00168
42300 1 0.00168
43800 1 0.00168
44100 1 0.00168
44800 1 0.00168
45500 1 0.00168
46000 1 0.00168
46000 1 0.00168
48000 1 0.00168
48800 1 0.00168
48800 1 0.00168
48900 1 0.00168
50000 1 0.00168
50500 1 0.00168
50900 1 0.00168
51100 1 0.00168
51600 1 0.00168
51800 1 0.00168
52200 1 0.00168
52300 1 0.00168

CL50 ----> CL46

image

No. of shared pairs: :156

CL50 ----> CL75

image

No. of shared pairs: :50

CL50 ----> CL61

image

No. of shared pairs: :17

CL50 ----> CL15

image

No. of shared pairs: :16

CL50 ----> CL19

image

No. of shared pairs: :14