Cluster no. 130

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Cluster is part of supercluster: 74

Cluster characteristics:

size 416
size_real 416
ecount 3496
supercluster 74
annotations_summary
pair_completeness 0.304075235109718
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00240384615384615
satellite_probability 1.1968150618018e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 124
S1 152
S3 140
comparative analysis - number of edges between species:
S2 S1 S3
S2 317 367 340
S1 367 456 430
S3 340 430 448
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.060 0.999 0.954
S1 0.999 1.020 0.985
S3 0.954 0.985 1.050

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
12 35
49 34

clusters connected through mates:

Cluster Number of shared
read pairs		 k
12 109 0.0602
49 48 0.0703
67 3 0.0062
18 1 0.000507
22 1 0.000921
24 1 0.000823
39 1 0.000864
50 1 0.00142
59 1 0.00191
74 1 0.000938
80 1 0.00117
1850 1 0.00873
2130 1 0.0087
2180 1 0.00877
42600 1 0.00893

CL130 ----> CL12

image

No. of shared pairs: :109

CL130 ----> CL49

image

No. of shared pairs: :48