Cluster no. 129
Go back to cluster table
Cluster is part of supercluster: 73
Cluster characteristics:
| size |
423 |
| size_real |
423 |
| ecount |
6158 |
| supercluster |
73 |
| annotations_summary |
|
| pair_completeness |
0.590225563909774 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00709219858156028 |
| satellite_probability |
4.10825630042199e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S2 |
133 |
| S1 |
140 |
| S3 |
150 |
comparative analysis - number of edges between species:
|
S2 |
S1 |
S3 |
| S2 |
593 |
606 |
664 |
| S1 |
606 |
713 |
756 |
| S3 |
664 |
756 |
800 |
comparative analysis - observed/expected number of edges between species
|
S2 |
S1 |
S3 |
| S2 |
1.050 |
0.965 |
0.988 |
| S1 |
0.965 |
1.020 |
1.010 |
| S3 |
0.988 |
1.010 |
1.000 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
| 12 |
75 |
| 13 |
30 |
| 21 |
30 |
| 24 |
14 |
| 45 |
2 |
| 47 |
1 |
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 21 |
38 |
0.0449 |
| 12 |
31 |
0.0177 |
| 1360 |
4 |
0.0661 |
| 6400 |
4 |
0.0708 |
| 17 |
2 |
0.00157 |
| 2590 |
2 |
0.0351 |
| 17600 |
2 |
0.036 |
| 13 |
1 |
0.00068 |
| 22 |
1 |
0.000971 |
| 24 |
1 |
0.000863 |
| 28 |
1 |
0.000757 |
| 37 |
1 |
0.000853 |
| 47 |
1 |
0.00296 |
| 4650 |
1 |
0.0175 |
| 15300 |
1 |
0.018 |
| 48800 |
1 |
0.018 |
|
CL129 ----> CL21
No. of shared pairs: :38
CL129 ----> CL12
No. of shared pairs: :31