Cluster no. 44

Cluster no. 44

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Cluster is part of supercluster: 4

Cluster characteristics:

size	4615
size_real	4615
ecount	119678
supercluster	4
annotations_summary	0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.04% Class_I/LINE:LINE-RT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 0.02% organelle/plastid 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 0.02% Class_I/LTR/Ty1_copia/Bianca:Ty1-GAG
pair_completeness	0.475855452510393
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00715059588299025
satellite_probability	8.26675057188842e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	1540
S1	1530
S3	1540

comparative analysis - number of edges between species:

	S2	S1	S3
S2	14200	14100	13000
S1	14100	14000	12800
S3	13000	12800	11700

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.995	1.000	1.000
S1	1.000	0.997	1.000
S3	1.000	1.000	0.993

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00022

LINE LINE-RT LINE LINE-RT 2 0.00043

Bianca Ty1-GAG Bianca Ty1-GAG 1 0.00022

Ale Ty1-RT Ale Ty1-RT 1 0.00022

Reina Ty3-GAG Reina Ty3-GAG 2 0.00043

Tekay Ty3-GAG Tekay Ty3-GAG 1 0.00022

Tekay Ty3-RH Tekay Ty3-RH 1 0.00022

clusters with similarity:

Cluster	Number of similarity hits

42	1590
29	884
69	142
9	33
1	1
409	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

42	697	0.38
29	347	0.202
69	122	0.112
9	5	0.00244
54	5	0.00479
4	4	0.0013
2230	4	0.00486
2590	4	0.00486
39	3	0.00161
1150	3	0.00364
1960	3	0.00365
2280	3	0.00365
4000	3	0.00365
12500	3	0.00365
6	2	0.000888
13	2	0.000895
15	2	0.00176
21	2	0.00124
22	2	0.00111
24	2	0.00104
48	2	0.0015
68	2	0.00138
71	2	0.00185
74	2	0.00113
2280	2	0.00243
4390	2	0.00243
5450	2	0.00243
5880	2	0.00243
6320	2	0.00243
6690	2	0.00243
8900	2	0.00244
12700	2	0.00244
14200	2	0.00244
21000	2	0.00244
25800	2	0.00244
28100	2	0.00244
31900	2	0.00244
37500	2	0.00244
39700	2	0.00244
44100	2	0.00244
51700	2	0.00244
1	1	0.000355
2	1	0.000333
8	1	0.000718
10	1	0.000487
11	1	0.000487
12	1	0.000397
16	1	0.000404
25	1	0.000593
32	1	0.000512
34	1	0.000914
35	1	0.000397
37	1	0.000516
38	1	0.00057
46	1	0.000713
50	1	0.000708
57	1	0.000926
64	1	0.000888
67	1	0.000839
73	1	0.000801
97	1	0.000813
102	1	0.00114
119	1	0.00103
139	1	0.00107
164	1	0.00112
207	1	0.00118
409	1	0.0012
1290	1	0.00122
3460	1	0.00122
3660	1	0.00122
5310	1	0.00122
5400	1	0.00122
7120	1	0.00122
8030	1	0.00122
13000	1	0.00122
14000	1	0.00122
14300	1	0.00122
15100	1	0.00122
15400	1	0.00122
15500	1	0.00122
18700	1	0.00122
23600	1	0.00122
27000	1	0.00122
31600	1	0.00122
32300	1	0.00122
32300	1	0.00122
36300	1	0.00122
37200	1	0.00122
38300	1	0.00122
38700	1	0.00122
44100	1	0.00122
44600	1	0.00122
44700	1	0.00122
46600	1	0.00122
46700	1	0.00122
49100	1	0.00122
49200	1	0.00122
49200	1	0.00122
49600	1	0.00122
51000	1	0.00122
51800	1	0.00122

CL44 ----> CL42

No. of shared pairs: :697

CL44 ----> CL29

No. of shared pairs: :347

CL44 ----> CL69

No. of shared pairs: :122