Cluster no. 134

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Cluster is part of supercluster: 78

Cluster characteristics:

size 366
size_real 366
ecount 1184
supercluster 78
annotations_summary 0.27% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
pair_completeness 0.176848874598071
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00273224043715847
satellite_probability 1.62357903081748e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 104
S1 135
S3 127
comparative analysis - number of edges between species:
S2 S1 S3
S2 94 105 126
S1 105 125 156
S3 126 156 191
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.050 0.991 0.973
S1 0.991 0.996 1.010
S3 0.973 1.010 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ivana Ty1-INT Ivana Ty1-INT 1 0.0027

clusters with similarity:

Cluster Number of similarity hits
17 18
79 3
14 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
17 49 0.0363
79 44 0.0876
14 3 0.00162
9 2 0.00148
7880 2 0.0154
25300 2 0.0155
10 1 0.000734
11 1 0.000734
22 1 0.000907
39 1 0.000851
74 1 0.000923
84 1 0.00235
1940 1 0.00755
3000 1 0.00769
4990 1 0.00766
6280 1 0.00769
12400 1 0.00772
13400 1 0.00772
20600 1 0.00775
31900 1 0.00775
50600 1 0.00775

CL134 ----> CL17

image

No. of shared pairs: :49

CL134 ----> CL79

image

No. of shared pairs: :44