Cluster no. 146

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Cluster is part of supercluster: 89

Cluster characteristics:

size 302
size_real 302
ecount 1316
supercluster 89
annotations_summary
pair_completeness 0.385321100917431
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0033112582781457
satellite_probability 7.03651426040455e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 83
S1 106
S3 113
comparative analysis - number of edges between species:
S2 S1 S3
S2 164 146 129
S1 146 149 144
S3 129 144 165
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.120 0.997 0.883
S1 0.997 1.020 0.986
S3 0.883 0.986 1.130

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
238 11 0.117
767 4 0.0523
1200 4 0.0559
49900 2 0.0294
12 1 0.000566
22 1 0.00096
23 1 0.00117
24 1 0.000854
98 1 0.00307
541 1 0.0122
993 1 0.0136
1460 1 0.0142
18700 1 0.0147
22900 1 0.0147
36700 1 0.0147

CL146 ----> CL238

image

No. of shared pairs: :11