Cluster no. 210

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Cluster is part of supercluster: 152

Cluster characteristics:

size	124
size_real	124
ecount	315
supercluster	152
annotations_summary	83.87% Class_I/LTR/Ty1_copia/Tork:Ty1-RT 3.23% Class_I/LTR/Ty1_copia/Alesia:Ty1-RT 1.61% Class_I/LTR/Ty1_copia/Ale:Ty1-RT 0.81% Class_I/LTR/Ty1_copia/Angela:Ty1-RT 0.81% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
pair_completeness	0.530864197530864
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00806451612903226
satellite_probability	6.30293069200862e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	32
S1	44
S3	48

comparative analysis - number of edges between species:

	S2	S1	S3
S2	18	20.0	38.0
S1	20	53.0	38.5
S3	38	38.5	51.0

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.982	0.743	1.240
S1	0.743	1.340	0.853
S3	1.240	0.853	0.988

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-RT Ale Ty1-RT 2 0.0161

Alesia Ty1-RT Alesia Ty1-RT 4 0.0323

Angela Ty1-RT Angela Ty1-RT 1 0.0081

Ikeros Ty1-RT Ikeros Ty1-RT 1 0.0081

Tork Ty1-RT Tork Ty1-RT 104 0.8387

clusters connected through mates:

Cluster	Number of shared read pairs	k

422	13	0.419
824	3	0.115
4590	3	0.146
984	1	0.0377
7870	1	0.0488
12300	1	0.0488
44700	1	0.05

CL210 ----> CL422

No. of shared pairs: :13