Cluster no. 204
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Cluster is part of supercluster: 146
Cluster characteristics:
| size |
133 |
| size_real |
133 |
| ecount |
331 |
| supercluster |
146 |
| annotations_summary |
|
| pair_completeness |
0.136752136752137 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0075187969924812 |
| satellite_probability |
6.94904844624655e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S2 |
46 |
| S1 |
50 |
| S3 |
37 |
comparative analysis - number of edges between species:
|
S2 |
S1 |
S3 |
| S2 |
23 |
28 |
20 |
| S1 |
28 |
71 |
56 |
| S3 |
20 |
56 |
29 |
comparative analysis - observed/expected number of edges between species
|
S2 |
S1 |
S3 |
| S2 |
1.510 |
0.842 |
0.888 |
| S1 |
0.842 |
0.978 |
1.140 |
| S3 |
0.888 |
1.140 |
0.871 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 14 |
30 |
0.0169 |
| 3 |
25 |
0.0157 |
| 148 |
4 |
0.0296 |
| 7380 |
2 |
0.0381 |
| 13 |
1 |
0.000682 |
| 17 |
1 |
0.000787 |
| 42 |
1 |
0.000939 |
| 1940 |
1 |
0.0182 |
| 48500 |
1 |
0.0194 |
|
CL204 ----> CL14
No. of shared pairs: :30
CL204 ----> CL3
No. of shared pairs: :25