Cluster no. 102

Go back to cluster table

Cluster is part of supercluster: 47

Cluster characteristics:

size	1039
size_real	1039
ecount	7901
supercluster	47
annotations_summary	33.59% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT 22.14% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT 16.65% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH 3.66% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH 3.56% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT 0.19% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT 0.10% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
pair_completeness	0.803819444444444
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000962463907603465
satellite_probability	2.63652108321905e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	358
S1	327
S3	354

comparative analysis - number of edges between species:

	S2	S1	S3
S2	1000	837	956
S1	837	717	816
S3	956	816	963

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.010	0.998	0.988
S1	0.998	1.010	0.994
S3	0.988	0.994	1.020

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ivana Ty1-INT Ivana Ty1-INT 2 0.00192

SIRE Ty1-INT SIRE Ty1-INT 230 0.22137

SIRE Ty1-PROT SIRE Ty1-PROT 37 0.03561

Ale Ty1-RH Ale Ty1-RH 1 0.00096

Ivana Ty1-RH Ivana Ty1-RH 38 0.03657

SIRE Ty1-RH SIRE Ty1-RH 173 0.16651

SIRE Ty1-RT SIRE Ty1-RT 349 0.33590

clusters with similarity:

Cluster	Number of similarity hits

53	17
86	11

clusters connected through mates:

Cluster	Number of shared read pairs	k

53	33	0.0671
86	13	0.0518
388	9	0.132
25	4	0.00434
13	2	0.00136
36	2	0.00364
3760	2	0.0339
11	1	0.000775
18	1	0.000521
24	1	0.000862
38	1	0.00101
44	1	0.00114
73	1	0.00206
191	1	0.00823
3880	1	0.0169
51400	1	0.0174

CL102 ----> CL53

No. of shared pairs: :33

CL102 ----> CL86

No. of shared pairs: :13