Cluster no. 123

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Cluster is part of supercluster: 39

Cluster characteristics:

size 519
size_real 519
ecount 6003
supercluster 39
annotations_summary
pair_completeness 0.39142091152815
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00192678227360308
satellite_probability 7.03651426040455e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 154
S1 166
S3 199
comparative analysis - number of edges between species:
S2 S1 S3
S2 517 532 721
S1 532 517 708
S3 721 708 1040
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.990 1.030 0.988
S1 1.030 1.000 0.978
S3 0.988 0.978 1.020

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
13 1
90 1
101 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
101 37 0.148
3360 2 0.0172
43700 2 0.0175
46700 2 0.0175
46800 2 0.0175
48300 2 0.0175
22 1 0.000919
40 1 0.00137
64 1 0.00238
80 1 0.00117
90 1 0.00194
105 1 0.00355
132 1 0.00763
161 1 0.0058
1340 1 0.00837
5950 1 0.00873
6610 1 0.00873
16700 1 0.00873
18900 1 0.00873
19800 1 0.00873
23900 1 0.00873
24900 1 0.00873
37400 1 0.00873
45400 1 0.00873
51100 1 0.00873

CL123 ----> CL101

image

No. of shared pairs: :37