Cluster no. 128

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Cluster is part of supercluster: 71

Cluster characteristics:

size 442
size_real 442
ecount 1134
supercluster 71
annotations_summary
pair_completeness 0.172413793103448
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00226244343891403
satellite_probability 1.63043922767248e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 144
S1 149
S3 149
comparative analysis - number of edges between species:
S2 S1 S3
S2 141 132 128
S1 132 111 114
S3 128 114 135
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.994 1.040 0.964
S1 1.040 0.993 0.959
S3 0.964 0.959 1.080

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
257 17 0.0883
444 9 0.0519
801 7 0.0423
212 3 0.0144
3320 3 0.0189
74 2 0.0018
530 2 0.0121
652 2 0.0122
967 2 0.0125
4540 2 0.0126
6880 2 0.0127
8840 2 0.0127
24900 2 0.0127
25500 2 0.0127
33100 2 0.0127
37900 2 0.0127
18 1 0.000496
22 1 0.000884
80 1 0.00111
90 1 0.00179
362 1 0.00568
651 1 0.00602
993 1 0.00615
1000 1 0.00619
3450 1 0.00629
3550 1 0.00629
5370 1 0.00633
5520 1 0.00633
6130 1 0.00633
6720 1 0.00633
8260 1 0.00635
12900 1 0.00635
13600 1 0.00635
13700 1 0.00635
14300 1 0.00635
15200 1 0.00637
15600 1 0.00637
15700 1 0.00637
17400 1 0.00637
19200 1 0.00637
20900 1 0.00637
27200 1 0.00637
27300 1 0.00637
30300 1 0.00637
34800 1 0.00637
38500 1 0.00637
38700 1 0.00637
44800 1 0.00637
46000 1 0.00637
46100 1 0.00637
50700 1 0.00637

CL128 ----> CL257

image

No. of shared pairs: :17