Cluster no. 183

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Cluster is part of supercluster: 125

Cluster characteristics:

size 180
size_real 180
ecount 924
supercluster 125
annotations_summary 8.89% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
pair_completeness 0.69811320754717
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00555555555555556
satellite_probability 1.39558417663517e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 39
S1 88
S3 53
comparative analysis - number of edges between species:
S2 S1 S3
S2 44.0 85.5 54.5
S1 85.5 246.0 134.0
S3 54.5 134.0 87.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.200 0.923 0.995
S1 0.923 1.050 0.965
S3 0.995 0.965 1.060

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
SIRE Ty1-GAG SIRE Ty1-GAG 16 0.089

clusters connected through mates:

Cluster Number of shared
read pairs		 k
356 10 0.333
317 5 0.233
46100 2 0.118
36 1 0.00197
12400 1 0.0571

CL183 ----> CL356

image

No. of shared pairs: :10