Cluster no. 186
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Cluster is part of supercluster: 128
Cluster characteristics:
| size |
173 |
| size_real |
173 |
| ecount |
1054 |
| supercluster |
128 |
| annotations_summary |
|
| pair_completeness |
0.517543859649123 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00578034682080925 |
| satellite_probability |
6.69549243788033e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S2 |
68 |
| S1 |
36 |
| S3 |
69 |
comparative analysis - number of edges between species:
|
S2 |
S1 |
S3 |
| S2 |
194.0 |
70.5 |
182.0 |
| S1 |
70.5 |
50.0 |
76.5 |
| S3 |
182.0 |
76.5 |
153.0 |
comparative analysis - observed/expected number of edges between species
|
S2 |
S1 |
S3 |
| S2 |
1.030 |
0.846 |
1.040 |
| S1 |
0.846 |
1.360 |
0.996 |
| S3 |
1.040 |
0.996 |
0.955 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 48 |
20 |
0.037 |
| 2500 |
5 |
0.161 |
| 137 |
2 |
0.0506 |
| 26200 |
2 |
0.0702 |
| 14 |
1 |
0.000572 |
| 24 |
1 |
0.000884 |
| 25 |
1 |
0.00112 |
| 80 |
1 |
0.0013 |
| 106 |
1 |
0.00595 |
| 226 |
1 |
0.0299 |
| 8610 |
1 |
0.0345 |
|
CL186 ----> CL48
No. of shared pairs: :20