Cluster no. 135

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Cluster is part of supercluster: 79

Cluster characteristics:

size 366
size_real 366
ecount 796
supercluster 79
annotations_summary
pair_completeness 0.48780487804878
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00273224043715847
satellite_probability 2.89707838193454e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 124
S1 124
S3 118
comparative analysis - number of edges between species:
S2 S1 S3
S2 89.0 91.5 79.0
S1 91.5 91.0 90.5
S3 79.0 90.5 94.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.05 1.030 0.92
S1 1.03 0.972 1.00
S3 0.92 1.000 1.08

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
34 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
58 24 0.0611
303 7 0.0993
1360 4 0.058
582 3 0.0438
839 3 0.0429
2900 3 0.0451
3360 3 0.0455
4590 3 0.0458
14200 3 0.0465
2540 2 0.0301
5630 2 0.0312
7110 2 0.0308
10800 2 0.031
60 1 0.0021
73 1 0.00203
1940 1 0.015
3710 1 0.0156
5160 1 0.0154
12600 1 0.0155
25700 1 0.0156
38000 1 0.0156
41500 1 0.0156
49600 1 0.0156

CL135 ----> CL58

image

No. of shared pairs: :24