Cluster no. 217

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Cluster is part of supercluster: 159

Cluster characteristics:

size 119
size_real 119
ecount 491
supercluster 159
annotations_summary 100.00% organelle/plastid
pair_completeness 0.776119402985075
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00840336134453781
satellite_probability 5.03771729774194e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 47
S1 33
S3 39
comparative analysis - number of edges between species:
S2 S1 S3
S2 68.0 58.5 71.0
S1 58.5 40.0 41.5
S3 71.0 41.5 41.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.856 1.040 1.150
S1 1.040 1.000 0.948
S3 1.150 0.948 0.854

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 119 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
181 6 0.429
9 1 0.000811
10 1 0.000805
39 1 0.000949
768 1 0.1
39300 1 0.118