Cluster no. 107

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Cluster is part of supercluster: 52

Cluster characteristics:

size 885
size_real 885
ecount 4462
supercluster 52
annotations_summary 0.11% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-RT
pair_completeness 0.462809917355372
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00112994350282486
satellite_probability 3.90603663686178e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 292
S1 323
S3 270
comparative analysis - number of edges between species:
S2 S1 S3
S2 537 566 436
S1 566 623 476
S3 436 476 344
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.010 0.986 1.010
S1 0.986 1.000 1.020
S3 1.010 1.020 0.972

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ty1-outgroup Ty1-RT Ty1-outgroup Ty1-RT 1 0.0011

clusters with similarity:

Cluster Number of similarity hits
2 19
10 14
30 3
1 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
10 74 0.053
1 8 0.0037
1350 5 0.0299
4740 5 0.0303
2 4 0.0017
30 4 0.00321
1600 4 0.024
1150 3 0.018
4830 3 0.0182
2360 2 0.0121
3920 2 0.0121
8500 2 0.0122
10900 2 0.0122
11800 2 0.0122
14200 2 0.0122
22100 2 0.0122
25800 2 0.0122
35600 2 0.0122
4 1 0.000413
12 1 0.000537
22 1 0.000879
36 1 0.00153
38 1 0.000911
56 1 0.000897
68 1 0.00127
159 1 0.00491
615 1 0.00578
1220 1 0.00602
1340 1 0.00601
2240 1 0.00608
3320 1 0.00612
4120 1 0.00613
4370 1 0.00606
6640 1 0.00612
9320 1 0.0061
10100 1 0.00613
12300 1 0.00613
12700 1 0.0061
13100 1 0.00613
13200 1 0.0061
13800 1 0.00613
14100 1 0.0061
20600 1 0.00612
22200 1 0.00612
23600 1 0.00612
25200 1 0.00612
25300 1 0.00612
25400 1 0.00612
29600 1 0.00612
30300 1 0.00612
36500 1 0.00612
36700 1 0.00612
37700 1 0.00612
38900 1 0.00612
41200 1 0.00612
42800 1 0.00612
43000 1 0.00612
48900 1 0.00612
49500 1 0.00612

CL107 ----> CL10

image

No. of shared pairs: :74