Cluster no. 90

Cluster no. 90

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Cluster is part of supercluster: 37

Cluster characteristics:

size	1710
size_real	1710
ecount	12189
supercluster	37
annotations_summary	0.18% Class_I/LTR/Ty1_copia/Angela:Ty1-RH 0.06% organelle/plastid 0.06% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
pair_completeness	0.360381861575179
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000584795321637427
satellite_probability	8.64114621709583e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	550
S1	571
S3	589

comparative analysis - number of edges between species:

	S2	S1	S3
S2	1000	1080	1330
S1	1080	1230	1550
S3	1330	1550	2050

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.050	1.000	0.964
S1	1.000	1.010	0.994
S3	0.964	0.994	1.030

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00058

Angela Ty1-RH Angela Ty1-RH 3 0.00175

Ale Ty1-RT Ale Ty1-RT 1 0.00058

clusters with similarity:

Cluster	Number of similarity hits

6	1
98	1
123	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

98	16	0.0242
238	14	0.0326
1650	5	0.0123
24	4	0.00266
36	4	0.00447
14	3	0.00141
17	3	0.00185
92	3	0.00427
796	3	0.00731
1910	3	0.00738
3	2	0.00103
6	2	0.00109
11	2	0.00122
18	2	0.000883
40	2	0.00196
48	2	0.00219
68	2	0.00195
1590	2	0.00491
1810	2	0.00494
3900	2	0.00494
9690	2	0.00496
18500	2	0.00496
30900	2	0.00496
38900	2	0.00496
2	1	0.000386
4	1	0.000376
9	1	0.000614
10	1	0.000611
12	1	0.000476
13	1	0.00055
16	1	0.000486
20	1	0.00148
23	1	0.000841
25	1	0.000789
28	1	0.000599
32	1	0.000651
35	1	0.000475
37	1	0.000658
38	1	0.000748
42	1	0.000706
56	1	0.000738
63	1	0.0016
64	1	0.00141
74	1	0.000737
84	1	0.00143
95	1	0.00163
97	1	0.00123
100	1	0.00196
123	1	0.00194
128	1	0.00179
140	1	0.00213
169	1	0.00235
197	1	0.00229
201	1	0.00224
207	1	0.00231
332	1	0.00235
409	1	0.0024
450	1	0.00246
457	1	0.00243
479	1	0.0024
652	1	0.00244
1400	1	0.00246
1570	1	0.00246
3070	1	0.00247
3110	1	0.00248
5120	1	0.00248
6100	1	0.00248
6700	1	0.00248
8000	1	0.00248
9510	1	0.00248
9600	1	0.00248
10300	1	0.00248
10300	1	0.00248
10800	1	0.00248
11200	1	0.00248
12200	1	0.00248
14000	1	0.00248
19200	1	0.00248
24700	1	0.00248
27900	1	0.00248
29800	1	0.00248
29900	1	0.00248
31400	1	0.00248
31600	1	0.00248
36300	1	0.00248
38500	1	0.00248
47300	1	0.00248
51400	1	0.00248
51700	1	0.00248

CL90 ----> CL98

No. of shared pairs: :16

CL90 ----> CL238

No. of shared pairs: :14