Cluster no. 65

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Cluster is part of supercluster: 10

Cluster characteristics:

size	3129
size_real	3129
ecount	48059
supercluster	10
annotations_summary	25.82% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT 16.46% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT 11.76% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH 6.04% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT 3.00% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH 0.86% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT 0.42% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT 0.32% Class_I/LTR/Ty1_copia/Tork:Ty1-INT 0.22% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.06% Class_I/LTR/Ty1_copia/Tork:Ty1-RT 0.03% Class_I/LTR/Ty1_copia/Alesia:Ty1-PROT 0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT 0.03% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-PROT 0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT 0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
pair_completeness	0.7972429638139
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000319590923617769
satellite_probability	2.63652108321905e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	967
S1	1080
S3	1080

comparative analysis - number of edges between species:

	S2	S1	S3
S2	4390	5150	5010
S1	5150	5840	5820
S3	5010	5820	5860

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.997	1.010	0.991
S1	1.010	0.993	0.997
S3	0.991	0.997	1.010

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-INT Ale Ty1-INT 7 0.00224

Ivana Ty1-INT Ivana Ty1-INT 13 0.00415

SIRE Ty1-INT SIRE Ty1-INT 515 0.16459

Tork Ty1-INT Tork Ty1-INT 10 0.00320

Ale Ty1-PROT Ale Ty1-PROT 1 0.00032

Alesia Ty1-PROT Alesia Ty1-PROT 1 0.00032

Gymco-II Ty1-PROT Gymco-II Ty1-PROT 1 0.00032

Ivana Ty1-PROT Ivana Ty1-PROT 27 0.00863

SIRE Ty1-PROT SIRE Ty1-PROT 189 0.06040

Tork Ty1-PROT Tork Ty1-PROT 1 0.00032

Ale Ty1-RH Ale Ty1-RH 1 0.00032

Ivana Ty1-RH Ivana Ty1-RH 94 0.03004

SIRE Ty1-RH SIRE Ty1-RH 368 0.11761

SIRE Ty1-RT SIRE Ty1-RT 808 0.25823

Tork Ty1-RT Tork Ty1-RT 2 0.00064

clusters with similarity:

Cluster	Number of similarity hits

36	136
51	14
83	10

clusters connected through mates:

Cluster	Number of shared read pairs	k

36	121	0.181
83	22	0.0561
706	10	0.0538
17	5	0.00358
364	4	0.0216
934	3	0.0163
3	2	0.00116
4	2	0.000821
12	2	0.00107
13	2	0.00126
16	2	0.00109
25	2	0.00192
38	2	0.0018
39	2	0.00164
40	2	0.00251
51	2	0.00391
72	2	0.00387
693	2	0.0108
2670	2	0.0112
7000	2	0.0113
23700	2	0.0113
43400	2	0.0113
44100	2	0.0113
10	1	0.000709
18	1	0.000491
22	1	0.000868
24	1	0.000781
28	1	0.000693
48	1	0.00145
50	1	0.0013
73	1	0.00165
81	1	0.00338
93	1	0.00243
96	1	0.00212
99	1	0.00385
106	1	0.00315
108	1	0.00402
189	1	0.00481
225	1	0.00509
632	1	0.00551
4610	1	0.00559
8600	1	0.00562
10600	1	0.00562
19400	1	0.00563
20800	1	0.00563
26400	1	0.00563
32600	1	0.00563
33200	1	0.00563

CL65 ----> CL36

No. of shared pairs: :121

CL65 ----> CL83

No. of shared pairs: :22

CL65 ----> CL706

No. of shared pairs: :10