Cluster no. 160

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Cluster is part of supercluster: 103

Cluster characteristics:

size 217
size_real 217
ecount 420
supercluster 103
annotations_summary
pair_completeness 0.261627906976744
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00460829493087558
satellite_probability 1.39528303731336e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 68
S1 75
S3 74
comparative analysis - number of edges between species:
S2 S1 S3
S2 39.0 46.5 38.0
S1 46.5 65.0 48.5
S3 38.0 48.5 50.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.070 0.988 0.947
S1 0.988 1.070 0.933
S3 0.947 0.933 1.130

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
185 12 0.0972
755 3 0.042
2560 2 0.0299
32800 2 0.031
36 1 0.0018
38 1 0.001
46 1 0.00155
75 1 0.00205
84 1 0.00277
92 1 0.00274
112 1 0.0109
1210 1 0.0145
1810 1 0.0149
3330 1 0.015
5990 1 0.0155
7030 1 0.0153
7180 1 0.0155
9250 1 0.0154
11300 1 0.0154
12500 1 0.0154
15300 1 0.0155
21100 1 0.0155
26000 1 0.0155
27800 1 0.0155
37400 1 0.0155
45900 1 0.0155
47700 1 0.0155

CL160 ----> CL185

image

No. of shared pairs: :12