Cluster no. 125

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Cluster is part of supercluster: 68

Cluster characteristics:

size 501
size_real 501
ecount 1623
supercluster 68
annotations_summary
pair_completeness 0.354054054054054
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00199600798403194
satellite_probability 9.19560910382493e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 164
S1 177
S3 160
comparative analysis - number of edges between species:
S2 S1 S3
S2 163 170 156
S1 170 213 199
S3 156 199 197
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.110 0.967 0.94
S1 0.967 1.020 1.01
S3 0.940 1.010 1.05

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
70 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
70 19 0.0441
289 13 0.0922
665 7 0.056
54 5 0.0146
775 4 0.0312
1280 4 0.0321
3700 3 0.0245
21 2 0.00219
2730 2 0.0164
3080 2 0.0165
3780 2 0.0164
5310 2 0.0165
11500 2 0.0165
28700 2 0.0166
30100 2 0.0166
41600 2 0.0166
44600 2 0.0166
45200 2 0.0166
2 1 0.000433
13 1 0.000651
16 1 0.000564
24 1 0.000817
60 1 0.00187
67 1 0.00203
73 1 0.00182
93 1 0.00282
98 1 0.00264
158 1 0.0059
601 1 0.00803
627 1 0.00787
809 1 0.00823
1270 1 0.00803
2080 1 0.00813
2410 1 0.0083
2460 1 0.0082
2960 1 0.00816
3370 1 0.00816
3590 1 0.00823
5330 1 0.00823
5430 1 0.0083
6300 1 0.0083
8990 1 0.00826
13000 1 0.00826
13100 1 0.00826
14100 1 0.00826
14200 1 0.00826
14500 1 0.00833
18700 1 0.0083
21000 1 0.0083
22300 1 0.0083
26000 1 0.0083
27800 1 0.0083
31500 1 0.0083
32200 1 0.0083
32700 1 0.0083
33400 1 0.0083
35100 1 0.0083
42900 1 0.0083
47800 1 0.0083
51700 1 0.0083

CL125 ----> CL70

image

No. of shared pairs: :19

CL125 ----> CL289

image

No. of shared pairs: :13