Cluster no. 193

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Cluster is part of supercluster: 135

Cluster characteristics:

size 160
size_real 160
ecount 2237
supercluster 135
annotations_summary
pair_completeness 0.151079136690647
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00625
satellite_probability 7.34185081690782e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 46
S1 71
S3 43
comparative analysis - number of edges between species:
S2 S1 S3
S2 185 280 185
S1 280 404 268
S3 185 268 181
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.98 1.010 1.000
S1 1.01 0.996 0.994
S3 1.00 0.994 1.010

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
6 3 0.00201
2 2 0.00089
3 2 0.00125
13 2 0.00136
98 2 0.00629
21600 2 0.0333
9 1 0.000779
11 1 0.000773
16 1 0.000583
23 1 0.00118
24 1 0.00086
30 1 0.000876
32 1 0.000839
34 1 0.00299
40 1 0.00147
67 1 0.00232
84 1 0.00281
99 1 0.00702
1410 1 0.0157
1970 1 0.0163
3060 1 0.0161
3130 1 0.0161
3340 1 0.0164
8600 1 0.0165
14000 1 0.0165
17200 1 0.0167
30000 1 0.0167
40100 1 0.0167
40500 1 0.0167
44600 1 0.0167
48000 1 0.0167