Cluster no. 16

Cluster no. 16

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Cluster is part of supercluster: 2

Cluster characteristics:

size	7660
size_real	7660
ecount	609038
supercluster	2
annotations_summary	0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT 0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
pair_completeness	0.396536007292616
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000913838120104439
satellite_probability	6.52979343237575e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	2460
S1	2540
S3	2670

comparative analysis - number of edges between species:

	S2	S1	S3
S2	64000	64400	68600
S1	64400	66100	69700
S3	68600	69700	73600

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.000	0.995	1.000
S1	0.995	1.000	1.000
S3	1.000	1.000	0.998

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-PROT Ale Ty1-PROT 1 0.00013

Athila Ty3-INT Athila Ty3-INT 1 0.00013

Tekay Ty3-INT Tekay Ty3-INT 3 0.00039

Tcn1 Ty3-RT Tcn1 Ty3-RT 1 0.00013

clusters with similarity:

Cluster	Number of similarity hits

14	11500
17	5560
13	2170
24	2000
6	265
151	7

clusters connected through mates:

Cluster	Number of shared read pairs	k

14	1110	0.329
24	683	0.248
13	533	0.174
17	197	0.0685
6	142	0.046
3	13	0.00406
151	12	0.007
38	11	0.00425
118	10	0.00572
22	8	0.00304
4	7	0.00179
9	7	0.00243
11	7	0.00242
8	6	0.00269
37	6	0.00216
42	5	0.00187
45	5	0.00239
74	5	0.00192
18	4	0.00114
68	4	0.00175
40	3	0.00132
1	2	0.000547
5	2	0.000525
34	2	0.00104
39	2	0.00074
48	2	0.000923
62	2	0.00117
64	2	0.00102
65	2	0.00109
70	2	0.00102
72	2	0.001
73	2	0.00096
75	2	0.000962
78	2	0.00109
86	2	0.00108
96	2	0.00103
1260	2	0.0012
25200	2	0.00121
28000	2	0.00121
32100	2	0.00121
2	1	0.00026
7	1	0.000263
12	1	0.000298
23	1	0.000409
26	1	0.000354
30	1	0.000365
31	1	0.00035
32	1	0.000359
33	1	0.000397
35	1	0.000298
43	1	0.000493
44	1	0.000404
51	1	0.000503
52	1	0.000545
56	1	0.000384
57	1	0.000522
59	1	0.000484
66	1	0.000529
67	1	0.000493
76	1	0.000491
79	1	0.000493
88	1	0.000527
90	1	0.000486
91	1	0.000561
95	1	0.000536
100	1	0.000567
111	1	0.000566
119	1	0.000555
125	1	0.000564
139	1	0.000566
141	1	0.00058
143	1	0.000594
161	1	0.000583
180	1	0.000596
193	1	0.000583
229	1	0.000597
231	1	0.000592
312	1	0.000596
324	1	6e-04
476	1	0.000601
529	1	0.000603
543	1	6e-04
632	1	0.000602
1250	1	0.000603
1280	1	0.000602
1600	1	0.000603
2170	1	0.000603
2370	1	0.000603
2870	1	0.000603
4400	1	0.000604
5960	1	0.000604
6000	1	0.000604
8940	1	0.000604
9200	1	0.000604
9420	1	0.000604
10400	1	0.000604
10700	1	0.000604
11800	1	0.000604
12000	1	0.000604
13300	1	0.000604
14900	1	0.000604
21300	1	0.000604
23000	1	0.000604
23700	1	0.000604
24500	1	0.000604
25400	1	0.000604
25700	1	0.000604
25800	1	0.000604
28000	1	0.000604
31500	1	0.000604
32500	1	0.000604
32900	1	0.000604
32900	1	0.000604
36600	1	0.000604
36800	1	0.000604
37300	1	0.000604
39700	1	0.000604
41600	1	0.000604
49200	1	0.000604

CL16 ----> CL14

No. of shared pairs: :1111

CL16 ----> CL24

No. of shared pairs: :683

CL16 ----> CL13

No. of shared pairs: :533

CL16 ----> CL17

No. of shared pairs: :197

CL16 ----> CL6

No. of shared pairs: :142

CL16 ----> CL3

No. of shared pairs: :13

CL16 ----> CL151

No. of shared pairs: :12

CL16 ----> CL38

No. of shared pairs: :11

CL16 ----> CL118

No. of shared pairs: :10