Cluster no. 78

Cluster no. 78

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Cluster is part of supercluster: 31

Cluster characteristics:

size	2426
size_real	2426
ecount	47556
supercluster	31
annotations_summary	0.04% Class_I/LINE:LINE-ENDO
pair_completeness	0.746580273578114
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.231657048639736
satellite_probability	1.78018418207427e-12
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	800
S1	802
S3	824

comparative analysis - number of edges between species:

	S2	S1	S3
S2	5590	5490	5260
S1	5490	5410	5110
S3	5260	5110	4850

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	0.996	0.998	1.010
S1	0.998	1.000	0.998
S3	1.010	0.998	0.996

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

LINE LINE-ENDO LINE LINE-ENDO 1 0.00041

clusters with similarity:

Cluster	Number of similarity hits

9	78
42	39
71	28
55	16
72	5
54	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

9	81	0.0578
42	30	0.0252
54	13	0.0325
71	13	0.0297
55	4	0.00822
3	3	0.00174
12	3	0.0016
72	3	0.00581
4	2	0.000821
11	2	0.00142
16	2	0.00109
46	2	0.00264
16900	2	0.0113
36500	2	0.0113
38600	2	0.0113
43000	2	0.0113
50400	2	0.0113
25	1	0.00096
26	1	0.000743
35	1	0.000532
39	1	0.000818
64	1	0.00207
68	1	0.00125
80	1	0.00109
287	1	0.00514
307	1	0.00509
492	1	0.00543
2220	1	0.00559
3730	1	0.00559
13100	1	0.00563
19000	1	0.00565
42400	1	0.00565
45700	1	0.00565
48500	1	0.00565
48900	1	0.00565
50000	1	0.00565

CL78 ----> CL9

No. of shared pairs: :81

CL78 ----> CL42

No. of shared pairs: :30

CL78 ----> CL54

No. of shared pairs: :13

CL78 ----> CL71

No. of shared pairs: :13