Cluster no. 116

Cluster no. 116

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Cluster is part of supercluster: 60

Cluster characteristics:

size	636
size_real	636
ecount	1999
supercluster	60
annotations_summary
pair_completeness	0.338947368421053
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00157232704402516
satellite_probability	9.7548493215956e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	208
S1	218
S3	210

comparative analysis - number of edges between species:

	S2	S1	S3
S2	254	240	216
S1	240	254	196
S3	216	196	187

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.010	0.978	1.020
S1	0.978	1.070	0.948
S3	1.020	0.948	1.040

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster	Number of shared read pairs	k

68	14	0.0179
353	8	0.0455
140	7	0.0312
4740	5	0.0313
22	2	0.00177
185	2	0.00922
3220	2	0.0125
7370	2	0.0126
11300	2	0.0126
13700	2	0.0126
18200	2	0.0127
26800	2	0.0127
29100	2	0.0127
13	1	0.000636
25	1	0.000978
36	1	0.00154
38	1	0.000916
42	1	0.000853
48	1	0.00149
67	1	0.00189
152	1	0.00493
1720	1	0.00625
1870	1	0.00627
2700	1	0.00627
3310	1	0.00629
4910	1	0.00627
7950	1	0.00631
8930	1	0.00631
9910	1	0.00635
10500	1	0.00631
10900	1	0.00635
11300	1	0.00631
11400	1	0.00631
12600	1	0.00631
18700	1	0.00633
21400	1	0.00633
22600	1	0.00633
27800	1	0.00633
31400	1	0.00633
39600	1	0.00633
40200	1	0.00633
43800	1	0.00633
45200	1	0.00633
50100	1	0.00633
50400	1	0.00633
51200	1	0.00633

CL116 ----> CL68

No. of shared pairs: :14