Cluster no. 205

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Cluster is part of supercluster: 147

Cluster characteristics:

size 131
size_real 131
ecount 381
supercluster 147
annotations_summary 62.60% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
10.69% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.76% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.76% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.76% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
pair_completeness 0.541176470588235
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00763358778625954
satellite_probability 5.9149989235368e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 35
S1 61
S3 35
comparative analysis - number of edges between species:
S2 S1 S3
S2 28.0 44.5 26.5
S1 44.5 82.0 52.0
S3 26.5 52.0 25.0
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.090 0.959 0.985
S1 0.959 0.981 1.070
S3 0.985 1.070 0.889

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TAR Ty1-INT TAR Ty1-INT 14 0.1069
Ikeros Ty1-RT Ikeros Ty1-RT 1 0.0076
SIRE Ty1-RT SIRE Ty1-RT 1 0.0076
TAR Ty1-RT TAR Ty1-RT 82 0.6260
Tcn1 Ty3-INT Tcn1 Ty3-INT 1 0.0076

clusters connected through mates:

Cluster Number of shared
read pairs		 k
224 7 0.184
853 3 0.122
13300 3 0.143
6040 2 0.093
10400 2 0.0952
20900 2 0.0976
8 1 0.00169
64 1 0.00307
396 1 0.027
2150 1 0.0465
6870 1 0.0465
13500 1 0.0476