Cluster no. 8

Go back to cluster table

Cluster is part of supercluster: 5

Cluster characteristics:

size 9567
size_real 9567
ecount 178417
supercluster 5
annotations_summary 10.08% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
8.31% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
5.54% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
4.30% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
3.60% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT
1.12% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.10% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH
0.01% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.786221060492905
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000731681822932999
satellite_probability 3.20953330666128e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 3110
S1 3250
S3 3200
comparative analysis - number of edges between species:
S2 S1 S3
S2 20100 20200 19300
S1 20200 20700 19900
S3 19300 19900 18900
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.010 0.994 0.994
S1 0.994 1.000 1.010
S3 0.994 1.010 0.999

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatV Ty3-GAG TatV Ty3-GAG 530 0.05540
CRM Ty3-INT CRM Ty3-INT 1 0.00010
TatV Ty3-INT TatV Ty3-INT 1 0.00010
Tekay Ty3-INT Tekay Ty3-INT 1 0.00010
TatV Ty3-PROT TatV Ty3-PROT 344 0.03596
TatIV_Ogre Ty3-RH TatIV_Ogre Ty3-RH 3 0.00031
TatV Ty3-RH TatV Ty3-RH 795 0.08310
TatIV_Ogre Ty3-RT TatIV_Ogre Ty3-RT 10 0.00105
TatV Ty3-RT TatV Ty3-RT 964 0.10076
TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 107 0.01118
TatV Ty3-aRH TatV Ty3-aRH 411 0.04296
hAT hAT-TPase hAT hAT-TPase 1 0.00010

clusters with similarity:

Cluster Number of similarity hits
63 429
29 3
46 2
14 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
63 164 0.206
221 16 0.0269
900 12 0.0207
9 11 0.00612
1520 11 0.019
252 10 0.0169
29 9 0.0061
47 9 0.0105
643 9 0.0156
18 7 0.00288
48 7 0.00645
486 7 0.0121
758 7 0.0121
954 7 0.0121
1020 7 0.0121
1370 7 0.0121
16 6 0.00269
57 6 0.0072
1070 6 0.0104
2380 6 0.0104
3610 6 0.0104
2 5 0.00181
6 5 0.0025
13 5 0.00252
27 5 0.00283
56 5 0.00328
974 5 0.00865
1210 5 0.0087
1 4 0.00155
3 4 0.00189
4 4 0.00141
7 4 0.00147
25 4 0.00278
31 4 0.00225
32 4 0.00235
956 4 0.00691
1840 4 0.00696
1850 4 0.00694
1850 4 0.00694
1870 4 0.00694
5280 4 0.00696
5900 4 0.00696
7040 4 0.00696
10 3 0.00166
11 3 0.00166
14 3 0.00131
21 3 0.0022
33 3 0.00209
35 3 0.00132
38 3 0.00199
39 3 0.00185
46 3 0.0026
49 3 0.00262
80 3 0.00228
760 3 0.00519
1570 3 0.00522
2210 3 0.00521
2790 3 0.00522
4680 3 0.00522
5520 3 0.00522
5820 3 0.00522
7000 3 0.00522
7800 3 0.00522
8090 3 0.00523
8480 3 0.00523
10000 3 0.00523
14400 3 0.00523
5 2 0.000734
12 2 0.00088
17 2 0.00112
19 2 0.00226
20 2 0.00236
22 2 0.00129
24 2 0.00119
26 2 0.00115
28 2 0.00109
30 2 0.00121
43 2 0.00211
45 2 0.00198
50 2 0.00172
59 2 0.00203
69 2 0.00237
73 2 0.002
96 2 0.0023
111 2 0.00293
873 2 0.00346
1080 2 0.00348
1710 2 0.00346
1730 2 0.00347
1970 2 0.00347
3190 2 0.00348
3430 2 0.00348
3740 2 0.00348
4660 2 0.00348
5680 2 0.00348
5860 2 0.00348
6350 2 0.00348
7000 2 0.00348
8080 2 0.00348
8170 2 0.00348
8470 2 0.00348
9250 2 0.00348
9480 2 0.00348
11600 2 0.00348
11800 2 0.00348
14000 2 0.00348
14200 2 0.00348
15600 2 0.00349
19100 2 0.00349
20300 2 0.00349
20400 2 0.00349
25900 2 0.00349
29400 2 0.00349
29800 2 0.00349
31400 2 0.00349
31900 2 0.00349
33000 2 0.00349
33100 2 0.00349
38500 2 0.00349
41100 2 0.00349
41700 2 0.00349
45900 2 0.00349
48800 2 0.00349
34 1 0.00118
36 1 0.000939
40 1 0.000839
42 1 0.00063
44 1 0.000718
51 1 0.0011
52 1 0.00133
54 1 0.00126
60 1 0.00101
64 1 0.00114
67 1 0.00106
70 1 0.00113
71 1 0.0012
72 1 0.0011
75 1 0.001
76 1 0.00105
77 1 0.00136
88 1 0.00123
100 1 0.00147
115 1 0.00162
127 1 0.00171
147 1 0.00171
171 1 0.00171
185 1 0.00158
198 1 0.00162
205 1 0.00169
300 1 0.00169
350 1 0.00172
423 1 0.0017
474 1 0.00172
743 1 0.00172
852 1 0.00174
1090 1 0.00173
1160 1 0.00173
1410 1 0.00174
1450 1 0.00174
1620 1 0.00174
1940 1 0.00174
2080 1 0.00174
2220 1 0.00174
2280 1 0.00174
2380 1 0.00173
2670 1 0.00174
2700 1 0.00174
2750 1 0.00174
3040 1 0.00174
3100 1 0.00174
3270 1 0.00174
3340 1 0.00174
3470 1 0.00174
3500 1 0.00174
4190 1 0.00174
4230 1 0.00174
4400 1 0.00174
4880 1 0.00174
4930 1 0.00174
4960 1 0.00174
4970 1 0.00174
5020 1 0.00174
5070 1 0.00174
5340 1 0.00174
5630 1 0.00174
5920 1 0.00174
6580 1 0.00174
6600 1 0.00174
6860 1 0.00174
6910 1 0.00174
7300 1 0.00174
7450 1 0.00174
7520 1 0.00174
7960 1 0.00174
8060 1 0.00175
8180 1 0.00174
8710 1 0.00174
9220 1 0.00174
9380 1 0.00174
9420 1 0.00174
9490 1 0.00175
9790 1 0.00174
9860 1 0.00175
10200 1 0.00175
10400 1 0.00174
10900 1 0.00174
11300 1 0.00174
11300 1 0.00174
11500 1 0.00174
11900 1 0.00174
12300 1 0.00174
12300 1 0.00175
13400 1 0.00174
13400 1 0.00174
13400 1 0.00175
13400 1 0.00174
13800 1 0.00174
13900 1 0.00174
14200 1 0.00174
15100 1 0.00174
15100 1 0.00174
15300 1 0.00174
15900 1 0.00174
17600 1 0.00174
18000 1 0.00174
18700 1 0.00174
19000 1 0.00174
19700 1 0.00174
19800 1 0.00174
20100 1 0.00174
21500 1 0.00174
23300 1 0.00174
24300 1 0.00174
24900 1 0.00174
27000 1 0.00174
30100 1 0.00174
30800 1 0.00174
31100 1 0.00174
32700 1 0.00174
33200 1 0.00174
34800 1 0.00174
35800 1 0.00174
36100 1 0.00174
37200 1 0.00174
39600 1 0.00174
41200 1 0.00174
43000 1 0.00174
43200 1 0.00174
43900 1 0.00174
44000 1 0.00174
44600 1 0.00174
45000 1 0.00174
46200 1 0.00174
48400 1 0.00174
49700 1 0.00174
50400 1 0.00174
51700 1 0.00174
51700 1 0.00174

CL8 ----> CL63

image

No. of shared pairs: :164

CL8 ----> CL221

image

No. of shared pairs: :16

CL8 ----> CL900

image

No. of shared pairs: :12

CL8 ----> CL9

image

No. of shared pairs: :11

CL8 ----> CL1522

image

No. of shared pairs: :11

CL8 ----> CL252

image

No. of shared pairs: :10