Cluster no. 108

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Cluster is part of supercluster: 53

Cluster characteristics:

size 861
size_real 861
ecount 6145
supercluster 53
annotations_summary 4.88% Class_I/LTR/Ty1_copia/Bianca:Ty1-RH
0.23% Class_II/Subclass_1/TIR/hAT:hAT-TPase
pair_completeness 0.711729622266402
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.13588850174216
satellite_probability 1.05271893017942e-15
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 287
S1 279
S3 295
comparative analysis - number of edges between species:
S2 S1 S3
S2 724 728 638
S1 728 731 660
S3 638 660 637
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.020 1.010 0.969
S1 1.010 1.000 0.989
S3 0.969 0.989 1.040

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Bianca Ty1-RH Bianca Ty1-RH 42 0.0488
hAT hAT-TPase hAT hAT-TPase 2 0.0023

clusters connected through mates:

Cluster Number of shared
read pairs		 k
192 9 0.0957
163 6 0.0615
236 4 0.0494
998 3 0.039
10400 3 0.0405
13 2 0.00134
37 2 0.00168
74 2 0.00195
734 2 0.0261
2080 2 0.0265
7790 2 0.0268
27100 2 0.0272
6 1 0.000665
9 1 0.00077
32 1 0.00083
65 1 0.00402
72 1 0.00242
80 1 0.00122
83 1 0.00347
93 1 0.00325
184 1 0.00922
287 1 0.011
526 1 0.0122
561 1 0.0126
571 1 0.012
4140 1 0.0133
4710 1 0.0133
7950 1 0.0137
8630 1 0.0135
12200 1 0.0135
16100 1 0.0136
21300 1 0.0136
27700 1 0.0136
29700 1 0.0136
44500 1 0.0136
44900 1 0.0136