Cluster no. 117

Go back to cluster table

Cluster is part of supercluster: 61

Cluster characteristics:

size 623
size_real 623
ecount 3620
supercluster 61
annotations_summary 0.16% organelle/plastid
pair_completeness 0.569269521410579
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0128410914927769
satellite_probability 4.79804177716536e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 211
S1 212
S3 200
comparative analysis - number of edges between species:
S2 S1 S3
S2 434 418 388
S1 418 465 384
S3 388 384 344
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.020 0.964 1.020
S1 0.964 1.050 0.983
S3 1.020 0.983 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.0016

clusters with similarity:

Cluster Number of similarity hits
27 70
1 1
46 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
27 74 0.0578
1340 5 0.0552
1 2 0.000959
4 2 0.000853
2960 2 0.0229
6810 2 0.0229
11800 2 0.023
18700 2 0.0231
37500 2 0.0231
47300 2 0.0231
30 1 0.000856
46 1 0.0015
83 1 0.00332
8090 1 0.0115
10400 1 0.0115
10500 1 0.0115
11300 1 0.0115
13000 1 0.0115
19200 1 0.0116
23200 1 0.0116
24200 1 0.0116
24800 1 0.0116
33100 1 0.0116
39100 1 0.0116
40200 1 0.0116
42500 1 0.0116
48800 1 0.0116

CL117 ----> CL27

image

No. of shared pairs: :74