Cluster no. 105

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Cluster is part of supercluster: 50

Cluster characteristics:

size 913
size_real 913
ecount 9039
supercluster 50
annotations_summary 0.44% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.11% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.11% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
pair_completeness 0.4608
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0799561883899233
satellite_probability 1.48115570139447e-16
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 310
S1 327
S3 276
comparative analysis - number of edges between species:
S2 S1 S3
S2 1100 1160 910
S1 1160 1210 931
S3 910 931 740
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.992 1.000 1.010
S1 1.000 1.010 0.989
S3 1.010 0.989 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 1 0.0011
Angela Ty1-INT Angela Ty1-INT 4 0.0044
Reina Ty3-GAG Reina Ty3-GAG 1 0.0011

clusters with similarity:

Cluster Number of similarity hits
50 14
75 11
46 5
39 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
75 53 0.0895
46 10 0.0133
92 5 0.0106
50 4 0.00526
173 4 0.0196
2180 4 0.0232
15 3 0.00614
1790 3 0.0175
5110 3 0.0175
6470 3 0.0176
13000 3 0.0176
635 2 0.0114
1240 2 0.0115
1250 2 0.0115
1810 2 0.0116
26400 2 0.0118
41800 2 0.0118
47300 2 0.0118
1 1 0.000461
2 1 0.000424
3 1 0.000583
6 1 0.000625
10 1 0.000713
13 1 0.000631
19 1 0.00209
23 1 0.00105
24 1 0.000786
26 1 0.000748
36 1 0.00151
39 1 0.000823
42 1 0.000845
62 1 0.00457
114 1 0.0022
123 1 0.00355
223 1 0.0049
659 1 0.00571
1230 1 0.00581
1550 1 0.00581
1690 1 0.0058
2200 1 0.00583
2220 1 0.00583
3540 1 0.00583
3750 1 0.00585
4840 1 0.00588
6620 1 0.0059
6960 1 0.00587
7280 1 0.00587
8120 1 0.00588
8560 1 0.00592
10100 1 0.00588
11400 1 0.00588
11700 1 0.00588
13000 1 0.00588
14000 1 0.00592
14200 1 0.00592
17300 1 0.0059
27700 1 0.0059
32400 1 0.0059
35100 1 0.0059
38000 1 0.0059
38000 1 0.0059
39500 1 0.0059
39900 1 0.0059
41500 1 0.0059
43200 1 0.0059
44400 1 0.0059
46100 1 0.0059

CL105 ----> CL75

image

No. of shared pairs: :53

CL105 ----> CL46

image

No. of shared pairs: :10