Cluster no. 17

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Cluster is part of supercluster: 2

Cluster characteristics:

size 7609
size_real 7609
ecount 308577
supercluster 2
annotations_summary 0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.04% organelle/plastid
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Bianca:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.01% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.514228855721393
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000788539886975949
satellite_probability 2.33736515693784e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 2450
S1 2620
S3 2540
comparative analysis - number of edges between species:
S2 S1 S3
S2 33300 33800 34400
S1 33800 34200 34800
S3 34400 34800 35200
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.999 1 1.000
S1 1.000 1 1.000
S3 1.000 1 0.998

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 3 0.00039
MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 1 0.00013
Ale Ty1-INT Ale Ty1-INT 3 0.00039
Tork Ty1-INT Tork Ty1-INT 1 0.00013
Bianca Ty1-RH Bianca Ty1-RH 1 0.00013
SIRE Ty1-RH SIRE Ty1-RH 1 0.00013
Tekay Ty3-GAG Tekay Ty3-GAG 5 0.00066
Tekay Ty3-INT Tekay Ty3-INT 1 0.00013

clusters with similarity:

Cluster Number of similarity hits
16 5560
13 1450
79 1090
24 702
6 177
89 156
14 86
121 66
12 33
37 27
3 20
134 18
9 1
151 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
13 400 0.152
16 197 0.0685
14 194 0.0659
79 159 0.0997
89 156 0.107
6 120 0.0452
134 49 0.0363
24 45 0.0194
3 42 0.0152
12 38 0.013
121 25 0.0199
9 9 0.00368
219 7 0.0057
74 6 0.00276
324 6 0.00487
3360 6 0.0049
4 5 0.00144
22 5 0.00228
37 5 0.00214
42 5 0.00224
65 5 0.00358
1860 5 0.00409
11 4 0.00163
38 4 0.00186
39 4 0.00176
1000 4 0.00326
23 3 0.00149
68 3 0.00163
73 3 0.00182
80 3 0.00153
90 3 0.00185
8 2 0.00112
10 2 0.000815
33 2 0.000959
36 2 0.00117
40 2 0.00109
45 2 0.00121
50 2 0.0011
84 2 0.00132
92 2 0.00131
96 2 0.00132
129 2 0.00157
541 2 0.00162
3050 2 0.00164
4490 2 0.00164
6280 2 0.00164
6790 2 0.00164
9180 2 0.00164
26400 2 0.00164
34100 2 0.00164
36500 2 0.00164
40200 2 0.00164
1 1 0.00031
2 1 0.000293
5 1 0.000297
7 1 0.000297
21 1 0.000497
25 1 0.000479
30 1 0.000434
32 1 0.000425
34 1 0.000669
35 1 0.000342
43 1 0.000627
46 1 0.000554
48 1 0.000577
51 1 0.000643
53 1 0.000604
55 1 0.000653
60 1 0.000612
64 1 0.000655
67 1 0.000628
69 1 0.00067
70 1 0.000653
72 1 0.000641
75 1 0.000608
81 1 0.000747
82 1 0.000786
86 1 0.000707
93 1 0.000687
98 1 0.000676
99 1 0.000767
100 1 0.000753
161 1 0.000782
204 1 0.000787
222 1 0.000805
300 1 0.000808
311 1 0.000799
340 1 0.000808
577 1 0.000812
1160 1 0.000816
1490 1 0.000816
2370 1 0.000817
2500 1 0.000818
2690 1 0.000818
2800 1 0.000817
3040 1 0.000818
3170 1 0.000817
3230 1 0.000817
3940 1 0.000818
4130 1 0.000818
4180 1 0.000818
4420 1 0.000818
4850 1 0.000818
6360 1 0.000818
7090 1 0.000819
7500 1 0.000819
8340 1 0.000818
8930 1 0.000818
9600 1 0.000818
10400 1 0.000819
10400 1 0.000818
10500 1 0.000818
10800 1 0.000818
12000 1 0.000819
12200 1 0.000818
12600 1 0.000818
13800 1 0.000819
14000 1 0.000818
14100 1 0.000818
17100 1 0.000819
20900 1 0.000819
22400 1 0.000819
23000 1 0.000819
24900 1 0.000819
25300 1 0.000819
28500 1 0.000819
28600 1 0.000819
29200 1 0.000819
29400 1 0.000819
29900 1 0.000819
30700 1 0.000819
31900 1 0.000819
36200 1 0.000819
37600 1 0.000819
37900 1 0.000819
38200 1 0.000819
43200 1 0.000819
44400 1 0.000819
47700 1 0.000819
48100 1 0.000819
48200 1 0.000819
48900 1 0.000819
49400 1 0.000819
50000 1 0.000819
52100 1 0.000819

CL17 ----> CL13

image

No. of shared pairs: :400

CL17 ----> CL16

image

No. of shared pairs: :197

CL17 ----> CL14

image

No. of shared pairs: :194

CL17 ----> CL79

image

No. of shared pairs: :159

CL17 ----> CL89

image

No. of shared pairs: :156

CL17 ----> CL6

image

No. of shared pairs: :120

CL17 ----> CL134

image

No. of shared pairs: :49

CL17 ----> CL24

image

No. of shared pairs: :45

CL17 ----> CL3

image

No. of shared pairs: :42

CL17 ----> CL12

image

No. of shared pairs: :38

CL17 ----> CL121

image

No. of shared pairs: :25