Cluster no. 120

Go back to cluster table

Cluster is part of supercluster: 64

Cluster characteristics:

size 591
size_real 591
ecount 2584
supercluster 64
annotations_summary 99.15% organelle/plastid
0.17% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII
pair_completeness 0.876190476190476
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00169204737732657
satellite_probability 4.91298606542926e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 183
S1 214
S3 194
comparative analysis - number of edges between species:
S2 S1 S3
S2 244 274 241
S1 274 387 318
S3 241 318 288
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.100 0.952 0.969
S1 0.952 1.040 0.991
S3 0.969 0.991 1.040

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 586 0.9915
Reina Ty3-CHDII Reina Ty3-CHDII 1 0.0017

clusters connected through mates:

Cluster Number of shared
read pairs		 k
269 7 0.255
188 4 0.14
20200 2 0.0976
24 1 0.00089
39 1 0.000938
55 1 0.00303
100 1 0.00784
109 1 0.0217
333 1 0.0385
941 1 0.0377
4160 1 0.0476
39800 1 0.0488