Cluster no. 169

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Cluster is part of supercluster: 111

Cluster characteristics:

size 203
size_real 203
ecount 907
supercluster 111
annotations_summary 15.27% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
8.37% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
3.45% organelle/mitochondria
3.45% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
1.48% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RH
pair_completeness 0.624
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00492610837438424
satellite_probability 5.75854876097884e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 89
S1 73
S3 41
comparative analysis - number of edges between species:
S2 S1 S3
S2 139 140 81
S1 140 113 81
S3 81 81 50
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 0.970 1.060 0.961
S1 1.060 0.916 1.040
S3 0.961 1.040 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 7 0.034
Ikeros Ty1-RH Ikeros Ty1-RH 3 0.015
Ivana Ty1-RH Ivana Ty1-RH 7 0.034
Tork Ty1-RH Tork Ty1-RH 31 0.153
Tork Ty1-RT Tork Ty1-RT 17 0.084

clusters connected through mates:

Cluster Number of shared
read pairs		 k
266 4 0.119
2120 4 0.145
214 2 0.0519
7560 2 0.0784
25 1 0.00112
90 1 0.00235
11800 1 0.0417
21200 1 0.0408