Cluster no. 80

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Cluster is part of supercluster: 1

Cluster characteristics:

size 2262
size_real 2262
ecount 29087
supercluster 1
annotations_summary 0.04% Class_II/Subclass_2/Helitron:Helitron-HEL1
0.04% organelle/plastid
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.04% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RH
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
pair_completeness 0.2064
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0013262599469496
satellite_probability 1.5718759856987e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S2 689
S1 809
S3 764
comparative analysis - number of edges between species:
S2 S1 S3
S2 2740 3300 2850
S1 3300 4100 3500
S3 2850 3500 2930
comparative analysis - observed/expected number of edges between species
S2 S1 S3
S2 1.01 0.99 1.000
S1 0.99 1.00 1.010
S3 1.00 1.01 0.988

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00044
Helitron Helitron-HEL1 Helitron Helitron-HEL1 1 0.00044
Ikeros Ty1-RH Ikeros Ty1-RH 1 0.00044
Athila Ty3-INT Athila Ty3-INT 1 0.00044
Tekay Ty3-RH Tekay Ty3-RH 1 0.00044
CRM Ty3-RT CRM Ty3-RT 1 0.00044

clusters with similarity:

Cluster Number of similarity hits
4 2180
33 96
5 2
28 1
60 1
147 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
4 477 0.159
33 273 0.17
114 45 0.0436
23 6 0.00392
39 6 0.00335
21 5 0.00325
22 4 0.00233
32 4 0.00213
1190 4 0.00534
1340 4 0.00533
1 3 0.00109
8 3 0.00228
17 3 0.00153
25 3 0.00186
70 3 0.00284
3390 3 0.00402
2 2 0.000682
3 2 0.000873
5 2 0.000691
7 2 0.000692
13 2 0.000926
14 2 0.000811
30 2 0.00109
40 2 0.00147
48 2 0.00159
52 2 0.00217
53 2 0.0017
54 2 0.00207
68 2 0.00146
75 2 0.00171
84 2 0.00192
115 2 0.00253
124 2 0.00228
166 2 0.00247
2520 2 0.00268
25400 2 0.00268
25900 2 0.00268
28000 2 0.00268
31700 2 0.00268
41900 2 0.00268
6 1 0.00046
9 1 0.000508
11 1 0.000506
12 1 0.000409
24 1 0.000541
26 1 0.000523
28 1 0.000497
31 1 0.000513
35 1 0.000409
36 1 0.000809
38 1 0.000596
42 1 0.000569
43 1 0.000894
46 1 0.000754
49 1 0.00076
50 1 0.000748
56 1 0.000589
60 1 0.000864
62 1 0.00126
67 1 0.000896
69 1 0.000984
71 1 0.000994
74 1 0.000589
76 1 0.00089
78 1 0.00109
83 1 0.00104
95 1 0.00105
97 1 0.000866
98 1 0.000997
106 1 0.00113
108 1 0.00122
111 1 0.00117
119 1 0.00112
122 1 0.00124
123 1 0.00117
128 1 0.00111
130 1 0.00117
139 1 0.00117
147 1 0.00132
157 1 0.00121
186 1 0.0013
201 1 0.00127
259 1 0.00129
334 1 0.00132
397 1 0.00133
660 1 0.00133
735 1 0.00133
868 1 0.00133
1600 1 0.00134
1690 1 0.00134
1700 1 0.00134
2130 1 0.00134
2410 1 0.00134
2750 1 0.00134
4750 1 0.00134
4820 1 0.00134
4970 1 0.00134
8170 1 0.00134
8260 1 0.00134
8630 1 0.00134
8640 1 0.00134
9940 1 0.00134
10200 1 0.00134
10600 1 0.00134
11200 1 0.00134
12300 1 0.00134
13800 1 0.00134
14100 1 0.00134
14500 1 0.00134
17600 1 0.00134
17700 1 0.00134
18400 1 0.00134
19900 1 0.00134
21400 1 0.00134
23900 1 0.00134
24200 1 0.00134
24900 1 0.00134
25000 1 0.00134
25100 1 0.00134
26300 1 0.00134
27300 1 0.00134
27400 1 0.00134
28400 1 0.00134
28600 1 0.00134
33500 1 0.00134
36500 1 0.00134
36800 1 0.00134
39700 1 0.00134
42600 1 0.00134
43000 1 0.00134
45500 1 0.00134
46600 1 0.00134
47400 1 0.00134
48600 1 0.00134
49400 1 0.00134
49400 1 0.00134
49500 1 0.00134
50400 1 0.00134
50900 1 0.00134

CL80 ----> CL4

image

No. of shared pairs: :477

CL80 ----> CL33

image

No. of shared pairs: :273

CL80 ----> CL114

image

No. of shared pairs: :45