Cluster no. 154

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Cluster is part of supercluster: 97

Cluster characteristics:

size	246
size_real	246
ecount	425
supercluster	97
annotations_summary	94.72% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 0.81% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.41% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
pair_completeness	0.133640552995392
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0040650406504065
satellite_probability	1.60428717791273e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S2	69
S1	93
S3	84

comparative analysis - number of edges between species:

	S2	S1	S3
S2	51.0	39	50.5
S1	39.0	53	46.0
S3	50.5	46	50.0

comparative analysis - observed/expected number of edges between species

	S2	S1	S3
S2	1.100	0.855	1.040
S1	0.855	1.180	0.967
S3	1.040	0.967	0.990

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Chlamyvir Ty3-RT Chlamyvir Ty3-RT 1 0.0041

Reina Ty3-RT Reina Ty3-RT 2 0.0081

Tekay Ty3-RT Tekay Ty3-RT 233 0.9472

clusters connected through mates:

Cluster	Number of shared read pairs	k

331	8	0.069
206	7	0.0488
1610	2	0.0204
11700	2	0.0209
39400	2	0.0211
48600	2	0.0211
25	1	0.00104
40	1	0.0014
604	1	0.00943
3000	1	0.0104
3410	1	0.0103
4100	1	0.0105
5350	1	0.0105
7040	1	0.0104
7490	1	0.0104
21400	1	0.0105
28500	1	0.0105
30300	1	0.0105
38000	1	0.0105
39100	1	0.0105
44000	1	0.0105
50300	1	0.0105
50400	1	0.0105
51500	1	0.0105